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[176832_at] 7TM chemoreceptor, srab family

Description Y40B10A.3 /REP_DB=WormBase Gene ID /WP=CE26079 /GB=AAK70658.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 34      6grp_cgc > 28      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 2.3
(-3)
A 		26.4
(1.2)
A 		36.6
(3)
A 		14.5
(-0.9)
A 		34
B 16.2
(-2.9)
A 		50.1
(3)
A 		40.1
(1.3)
A 		15.6
(-3)
A 		35
C 3.1
(-3)
A 		53.1
(2.5)
A 		5.1
(-2.8)
A 		57.4
(3)
A 		54
avr 7.2
(-3) 		43.2
(3) 		27.3
(0.4) 		29.2
(0.7) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 43.7
(2.9)
A 		10.2
(-2.3)
A 		5.5
(-3)
A 		6.3
(-2.9)
A 		44.6
(3)
A 		43.7
(2.9)
A 		39
B 6.3
(-2.7)
A 		6.8
(-2.6)
A 		24.5
(3)
A 		20.6
(1.8)
A 		5.4
(-3)
A 		23.7
(2.7)
A 		19
C 18.5
(-1.7)
A 		52.6
(3)
A 		18.2
(-1.7)
A 		26.2
(-0.6)
A 		8.6
(-3)
A 		27.5
(-0.4)
A 		44
avr 22.8
(-0.4) 		23.2
(-0.3) 		16.1
(-3) 		17.7
(-2.4) 		19.5
(-1.7) 		31.6
(3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 0.8
(-3)
A 		5.7
(0.3)
A 		9.6
(3)
A 		2.1
(-2.1)
A 		9
B 5.2
(-1.7)
A 		12.4
(3)
A 		9.3
(1)
A 		3.3
(-3)
A 		9
C 1
(-3)
A 		15.3
(3)
A 		1.8
(-2.7)
A 		9.7
(0.7)
A 		14
avr 2.3
(-3) 		11.1
(3) 		6.9
(0.1) 		5
(-1.2) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 8.1
(0.4)
A 		3.6
(-1.8)
A 		1.2
(-3)
A 		1.6
(-2.8)
A 		13.5
(3)
A 		10.6
(1.6)
A 		12
B 2.2
(-3)
A 		2.3
(-2.9)
A 		5.9
(0.4)
A 		5.4
(-0.1)
A 		2.2
(-3)
A 		8.8
(3)
A 		7
C 6.9
(-1.2)
A 		16.1
(3)
A 		4.6
(-2.2)
A 		5.3
(-1.9)
A 		2.8
(-3)
A 		9.2
(-0.1)
A 		13
avr 5.7
(-1.1) 		7.3
(0.6) 		3.9
(-3) 		4.1
(-2.8) 		6.2
(-0.5) 		9.5
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176832_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15100
Sequence Type Exemplar sequence
Representative Public ID Y40B10A.3 NCBI
Target Description Y40B10A.3 /REP_DB=WormBase Gene ID /WP=CE26079 /GB=AAK70658.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071154(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071154 NCBI Caenorhabditis elegans Serpentine Receptor, class AB (class A-like) family member (srab-23) (srab-23) mRNA, complete cds. 10/11 None
Y40B10A.3 ENSEMBL cdna:known chromosome:CEL140:V:2034496:2035473:-1 gene:Y40B10A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009372 2/11 Cross Hyb Matching Probes None
GENEFINDER00000009382 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2034495-2035473(-) 92.49 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srab family
Gene Symbol srab-23
Ensembl Y40B10A.3
Entrez Gene 189786 Entrez gene
SwissProt Q965W7 EMBL-EBI
WormBase CE38237 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK70658 Serpentine receptor, class ab (class a-like) protein 23 [Caenorhabditis elegans] ref|NP_503555.2| Serpentine Receptor, class AB (class A-like) family member (srab-23) [Caenorhabditis elegans] 1.0E-176
blast AAK70658 Serpentine receptor, class ab (class a-like) protein 23 [Caenorhabditis elegans] ref|NP_503555.2| Serpentine Receptor, class AB (class A-like) family member (srab-23) [Caenorhabditis elegans] 1.0E-122
blast AAC25846 Hypothetical protein C33G8.5 [Caenorhabditis elegans] ref|NP_504772.1| Serpentine Receptor, class AB (class A-like) family member (srab-4) [Caenorhabditis elegans] 5.0E-80
blast CAE71987 Hypothetical protein CBG19062 [Caenorhabditis briggsae] 4.0E-77
blast AAC25846 Hypothetical protein C33G8.5 [Caenorhabditis elegans] ref|NP_504772.1| Serpentine Receptor, class AB (class A-like) family member (srab-4) [Caenorhabditis elegans] 4.0E-56
blast CAE71987 Hypothetical protein CBG19062 [Caenorhabditis briggsae] 3.0E-54
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503555.2 6 27-49,105-127,148-170,190-212,248-269,279-301
Y40B10A.3 4 27-49,105-127,148-170,190-212
Sequence
Target Sequence 
>C. ELEGANS:176832_AT
tgttcctctttttggtcttttgctacattcaattggaagactcggcctacattcaactga
tcttgttgcgtatttcggaaattggcaggacccatgtgaaattataccgaatttttatag
gtgcctcatacttcgtggattctataatgtcggcctggcattgtcctcaatgtgctccgt
ggcgctggttatcgagaggattgttgccttaaagtactcgataacttatgagtattgtgg
acaattttttggagtgcttctagtgtttttgcagatttttctagccacatgctacttatt
cagcatgtacttccacgcagctttcacacctggggaccagaagctatattactgtcagac
aattgcttcgtcaactggatccgtgtggtttgtcattgctccgttgtatgcagttatgat
tggccaaattgcctcaagaatagtttttgaacttttattgaggaagaacaaggttaggac
aggggctgaggaattttcgtgctcaagggtgtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCCTCTTTTTGGTCTTTTGCTA 251 563 201 Antisense
CTCGGCCTACATTCAACTGATCTTG 40 233 241 Antisense
TAGGTGCCTCATACTTCGTGGATTC 247 655 318 Antisense
GTGGATTCTATAATGTCGGCCTGGC 508 489 335 Antisense
CTGGCATTGTCCTCAATGTGCTCCG 453 241 355 Antisense
CTCCGTGGCGCTGGTTATCGAGAGG 247 235 375 Antisense
TTATTCAGCATGTACTTCCACGCAG 402 679 496 Antisense
GACAATTGCTTCGTCAACTGGATCC 12 365 558 Antisense
AACTGGATCCGTGTGGTTTGTCATT 19 99 573 Antisense
GTTTGTCATTGCTCCGTTGTATGCA 549 451 588 Antisense
GGAATTTTCGTGCTCAAGGGTGTGC 626 531 690 Antisense
Sequence Source Affymetrix Proprietary Database