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[176831_at] 7TM chemoreceptor, srsx family

Description Y97E10B.3 /REP_DB=WormBase Gene ID /WP=CE26324 /GB=AAK71413.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 20      6grp_cgc > 16      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 33.1
(-2.7)
A 		62.4
(0.1)
A 		29.8
(-3)
A 		93.7
(3)
P 		64
B 50.1
(0.8)
A 		19
(-1.8)
A 		3.8
(-3)
A 		76.8
(3)
P 		73
C 46.9
(0.9)
A 		61.3
(3)
A 		21
(-3)
A 		58.1
(2.5)
P 		40
avr 43.4
(-0.4) 		47.6
(0) 		18.2
(-3) 		76.2
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 35.1
(0.1)
A 		29.8
(-0.8)
A 		34.5
(-0)
A 		15.6
(-3)
A 		23.9
(-1.7)
A 		53.9
(3)
A 		38
B 60.6
(3)
A 		33.7
(-1.1)
A 		21
(-3)
A 		23.3
(-2.7)
A 		28.4
(-1.9)
M 		52.6
(1.8)
A 		40
C 55.2
(2.7)
A 		50.3
(2.1)
A 		4.3
(-3)
A 		58
(3)
A 		20.1
(-1.2)
A 		29.5
(-0.2)
A 		54
avr 50.3
(3) 		37.9
(0.6) 		19.9
(-3) 		32.3
(-0.6) 		24.1
(-2.2) 		45.3
(2) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 12.1
(1.4)
A 		13.5
(2.8)
A 		7.8
(-3)
A 		13.7
(3)
P 		6
B 16
(2.8)
A 		4.7
(-1.5)
A 		0.9
(-3)
A 		16.4
(3)
P 		16
C 15.5
(1.8)
A 		17.6
(3)
A 		7.3
(-3)
A 		9.8
(-1.5)
P 		10
avr 14.5
(3) 		11.9
(1.3) 		5.3
(-3) 		13.3
(2.2) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 6.5
(-1.4)
A 		10.6
(1.4)
A 		7.5
(-0.7)
A 		4
(-3)
A 		7.2
(-0.9)
A 		13.1
(3)
A 		9
B 21.1
(3)
A 		11.2
(-0.7)
A 		5.1
(-3)
A 		6.2
(-2.6)
A 		11.5
(-0.6)
M 		19.6
(2.4)
A 		16
C 20.5
(3)
A 		15.4
(1.4)
A 		1.1
(-3)
A 		11.7
(0.3)
A 		6.5
(-1.3)
A 		9.9
(-0.3)
A 		19
avr 16
(3) 		12.4
(1.1) 		4.6
(-3) 		7.3
(-1.6) 		8.4
(-1) 		14.2
(2.1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176831_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11699
Sequence Type Exemplar sequence
Representative Public ID Y97E10B.3 NCBI
Target Description Y97E10B.3 /REP_DB=WormBase Gene ID /WP=CE26324 /GB=AAK71413.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072636(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072636 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-6) (srsx-6) mRNA, complete cds. 11/11 None
GENEFINDER00000041710 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7929675:7931042:1 11/11 None
Y97E10B.3 ENSEMBL cdna:known chromosome:CEL140:V:7929675:7931042:1 gene:Y97E10B.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7929675-7931043(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srsx family
Gene Symbol srsx-6
Ensembl Y97E10B.3
Entrez Gene 190818 Entrez gene
SwissProt Q965R7 EMBL-EBI
WormBase CE26324 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71413 Serpentine receptor, class sx protein 6 [Caenorhabditis elegans] ref|NP_505037.1| Serpentine Receptor, class SX family member (srsx-6) [Caenorhabditis elegans] 1.0E-139
blast AAK71412 Serpentine receptor, class sx protein 5 [Caenorhabditis elegans] ref|NP_505038.2| Serpentine Receptor, class SX family member (srsx-5) [Caenorhabditis elegans] 2.0E-45
blast CAE64033 Hypothetical protein CBG08630 [Caenorhabditis briggsae] 2.0E-45
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505037.1 6 13-35,88-110,123-145,170-192,213-235,242-264
Y97E10B.3 6 13-35,88-110,123-145,170-192,213-235,242-264
GENEFINDER00000041710 6 13-35,88-110,123-145,170-192,213-235,242-264
Sequence
Target Sequence 
>C. ELEGANS:176831_AT
ttattctcgcactaattcttccagtgatttttggtataatatttttcatttggggattca
tagaaacagatgatgaaattgttatattttgtaatccgccacttggattgaacattactg
caagcacttggttctttagatatattcttttcctcaatctccttactctcattgtttttc
taattttgattagaattttttatgctaaagatcaagcaaaacgtggggattcgtggaaag
tcatgaaacgacttcaaatatctgttgtaatttttgtgtgctcctggtttatagcacaat
cagctaactctgtgttcatcgcattgggaattacaggagagacgttcaattttctcgtag
ctaatgtgtccttctttgtcttgctctcattcagtcaatcattttatgtaataatctgga
aatcgaaagaatatcgtcaacacttcaagtctctttggtgtttcgggtccactggatctc
gagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATTCTCGCACTAATTCTTCCAGT 490 679 386 Antisense
GTTATATTTTGTAATCCGCCACTTG 689 447 466 Antisense
AGATATATTCTTTTCCTCAATCTCC 553 65 523 Antisense
CTCCTTACTCTCATTGTTTTTCTAA 302 235 544 Antisense
GTAATTTTTGTGTGCTCCTGGTTTA 237 455 652 Antisense
GCTAACTCTGTGTTCATCGCATTGG 587 301 688 Antisense
TCGTAGCTAATGTGTCCTTCTTTGT 309 601 740 Antisense
TGTCTTGCTCTCATTCAGTCAATCA 227 559 762 Antisense
GAATATCGTCAACACTTCAAGTCTC 447 325 814 Antisense
TCAAGTCTCTTTGGTGTTTCGGGTC 112 633 830 Antisense
TTTCGGGTCCACTGGATCTCGAGAC 440 667 846 Antisense
Sequence Source Affymetrix Proprietary Database