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[176829_at]

Description Y55B1AR.2 /REP_DB=WormBase Gene ID /WP=CE27021 /GB=AAK68901.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 27      6grp_total > 29      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 223.4
(3)
A 		156.9
(-2.5)
P 		157.6
(-2.5)
M 		151.3
(-3)
A 		72
B 206.4
(3)
P 		110
(-3)
A 		130.4
(-1.7)
P 		122.7
(-2.2)
P 		96
C 129
(-1)
P 		190.3
(2.5)
A 		95
(-3)
P 		199
(3)
P 		104
avr 186.3
(3) 		152.4
(-0.5) 		127.7
(-3) 		157.7
(0.1) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 142.8
(1.7)
A 		116.8
(0.2)
P 		64.5
(-3)
A 		86.4
(-1.7)
A 		139.9
(1.6)
A 		163.8
(3)
A 		99
B 128
(2.7)
A 		116.9
(1.6)
A 		131.5
(3)
A 		97
(-0.4)
A 		109.1
(0.8)
A 		70.1
(-3)
P 		61
C 126.6
(1)
P 		151.9
(3)
M 		131.7
(1.4)
A 		74.1
(-3)
A 		125.9
(1)
A 		86.6
(-2)
A 		78
avr 132.5
(3) 		128.5
(2.5) 		109.2
(0) 		85.8
(-3) 		125
(2) 		106.8
(-0.3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 81.4
(3)
A 		34.1
(-1.8)
P 		41.2
(-1.1)
M 		22.1
(-3)
A 		59
B 65.8
(3)
P 		27.2
(-2.8)
A 		30.2
(-2.4)
P 		26.1
(-3)
P 		40
C 42.7
(-0.3)
P 		54.7
(3)
A 		33.1
(-3)
P 		33.5
(-2.9)
P 		22
avr 63.3
(3) 		38.7
(-1.1) 		34.8
(-1.7) 		27.2
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 26.3
(-0.4)
A 		41.5
(2.9)
P 		14
(-3)
A 		21.9
(-1.3)
A 		42.2
(3)
A 		39.9
(2.5)
A 		28
B 44.5
(3)
A 		38.9
(1.2)
A 		31.9
(-1)
A 		25.7
(-3)
A 		44.3
(2.9)
A 		26.2
(-2.8)
P 		19
C 46.9
(3)
P 		46.4
(2.9)
M 		33.5
(0.5)
A 		14.9
(-3)
A 		40.7
(1.8)
A 		29
(-0.4)
A 		32
avr 39.2
(2.1) 		42.3
(3) 		26.5
(-1.4) 		20.8
(-3) 		42.4
(3) 		31.7
(0) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176829_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8163
Sequence Type Exemplar sequence
Representative Public ID Y55B1AR.2 NCBI
Target Description Y55B1AR.2 /REP_DB=WormBase Gene ID /WP=CE27021 /GB=AAK68901.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027743(11), NM_001027744(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027743 NCBI Caenorhabditis elegans Y55B1AR.2a (Y55B1AR.2) mRNA, complete cds. 11/11 None
NM_001027744 NCBI Caenorhabditis elegans Y55B1AR.2b (Y55B1AR.2) mRNA, complete cds. 11/11 None
SNAP00000028883 ENSEMBL cdna:SNAP chromosome:CEL140:III:590944:598102:-1 11/11 None
GENEFINDER00000028889 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:593284:598102:-1 11/11 None
Y55B1AR.2a ENSEMBL cdna:known chromosome:CEL140:III:587190:598102:-1 gene:Y55B1AR.2 11/11 A 
Y55B1AR.2b ENSEMBL cdna:known chromosome:CEL140:III:591346:598114:-1 gene:Y55B1AR.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:595785-598102(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y55B1AR.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68901 Hypothetical protein Y55B1AR.2a [Caenorhabditis elegans] ref|NP_001022914.1| Y55B1AR.2a [Caenorhabditis elegans] 0.0
blast AAP86610 Hypothetical protein Y55B1AR.2b [Caenorhabditis elegans] ref|NP_001022915.1| Y55B1AR.2b [Caenorhabditis elegans] 0.0
blast AAK68901 Hypothetical protein Y55B1AR.2a [Caenorhabditis elegans] ref|NP_001022914.1| Y55B1AR.2a [Caenorhabditis elegans] 1.0E-115
blast AAP86610 Hypothetical protein Y55B1AR.2b [Caenorhabditis elegans] ref|NP_001022915.1| Y55B1AR.2b [Caenorhabditis elegans] 1.0E-114
blast AAK68901 Hypothetical protein Y55B1AR.2a [Caenorhabditis elegans] ref|NP_001022914.1| Y55B1AR.2a [Caenorhabditis elegans] 1.0E-114
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000028889 1 447-469
Sequence
Target Sequence 
>C. ELEGANS:176829_AT
tgctgctgccacgtcgaaaaaaatgacgtacgaatttacgattgacgatgatgagcttag
tgaagatggaaaaccatcgacagatcaagccacaatgtgtaatatttacaagttgaattt
gcctgcaagtgcctccatattgagcaaacaaatcgcgaaatcacaggcaaaacgagccaa
aaaagaagagcgtcaccgccgacgagttgatctctcgacagtccgcgaacaggacgaaac
acgtgtctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTGCTGCCACGTCGAAAAAAATG 140 583 33 Antisense
TTACGATTGACGATGATGAGCTTAG 196 683 68 Antisense
AACCATCGACAGATCAAGCCACAAT 590 147 104 Antisense
TGAATTTGCCTGCAAGTGCCTCCAT 200 577 146 Antisense
GCAAGTGCCTCCATATTGAGCAAAC 601 321 157 Antisense
AACAAATCGCGAAATCACAGGCAAA 343 135 179 Antisense
AAAAGAAGAGCGTCACCGCCGACGA 11 131 213 Antisense
ACCGCCGACGAGTTGATCTCTCGAC 417 89 227 Antisense
ACGAGTTGATCTCTCGACAGTCCGC 645 93 234 Antisense
CTCTCGACAGTCCGCGAACAGGACG 604 231 244 Antisense
GAACAGGACGAAACACGTGTCTCAA 160 351 259 Antisense
Sequence Source Affymetrix Proprietary Database