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[176828_s_at]

Description Y40B10A.9 /REP_DB=WormBase Gene ID /WP=CE26083 /GB=AAK70664.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_highest_8_8 > 63      4grp_high_8_8 > 27      6grp_highest_nonorm > 70      6grp_total > 05      4grp_total > 36      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 281
(3)
P 		247.8
(-0.6)
P 		225.3
(-3)
P 		276.5
(2.5)
P 		56
B 246.8
(2.1)
P 		258.1
(3)
P 		180.8
(-3)
P 		191.1
(-2.2)
P 		77
C 254.4
(1.9)
P 		274.8
(3)
P 		162
(-3)
P 		259.3
(2.2)
P 		113
avr 260.7
(3) 		260.2
(3) 		189.4
(-3) 		242.3
(1.5) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 420.2
(3)
P 		324.1
(0)
P 		263.9
(-1.8)
P 		308
(-0.5)
P 		282.6
(-1.2)
P 		225.7
(-3)
P 		195
B 500.6
(3)
P 		376.1
(0.6)
P 		304
(-0.8)
P 		256.8
(-1.7)
P 		256.4
(-1.7)
P 		191.4
(-3)
P 		309
C 405.5
(3)
P 		360.9
(1.6)
P 		316.3
(0.3)
P 		209.2
(-3)
P 		253.2
(-1.6)
P 		208.4
(-3)
P 		197
avr 442.1
(3) 		353.7
(0.7) 		294.7
(-0.8) 		258
(-1.7) 		264.1
(-1.6) 		208.5
(-3) 		234
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 102.3
(3)
P 		53.8
(-1.7)
P 		58.9
(-1.2)
P 		40.5
(-3)
P 		62
B 78.7
(3)
P 		63.7
(0.6)
P 		41.9
(-2.8)
P 		40.7
(-3)
P 		38
C 84.2
(3)
P 		79
(2.2)
P 		56.5
(-1.1)
P 		43.7
(-3)
P 		41
avr 88.4
(3) 		65.5
(0.1) 		52.4
(-1.6) 		41.6
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 77.5
(-0.8)
P 		115.3
(3)
P 		57.5
(-2.7)
P 		78.1
(-0.7)
P 		85.3
(0)
P 		54.9
(-3)
P 		60
B 174.2
(3)
P 		125.2
(0.2)
P 		73.8
(-2.7)
P 		68
(-3)
P 		104.2
(-1)
P 		71.4
(-2.8)
P 		106
C 150.3
(3)
P 		110.1
(0.8)
P 		80.5
(-0.9)
P 		42.1
(-3)
P 		81.9
(-0.8)
P 		69.8
(-1.5)
P 		108
avr 134
(3) 		116.9
(1.6) 		70.6
(-2.3) 		62.7
(-3) 		90.5
(-0.7) 		65.4
(-2.8) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176828_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14825
Sequence Type Exemplar sequence
Representative Public ID Y40B10A.9 NCBI
Target Description Y40B10A.9 /REP_DB=WormBase Gene ID /WP=CE26083 /GB=AAK70664.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071162(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071162 NCBI Caenorhabditis elegans Y40B10A.9 (Y40B10A.9) mRNA, complete cds. 11/11 None
SNAP00000009381 ENSEMBL cdna:SNAP chromosome:CEL140:V:2069060:2072698:-1 11/11 None
GENEFINDER00000009384 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2069060:2072726:-1 11/11 None
Y40B10A.9 ENSEMBL cdna:known chromosome:CEL140:V:2069035:2072723:-1 gene:Y40B10A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2069059-2072698(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y40B10A.9
Entrez Gene 178687 Entrez gene
SwissProt Q965W0 EMBL-EBI
WormBase CE26083 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK70664 Hypothetical protein Y40B10A.9 [Caenorhabditis elegans] ref|NP_503563.1| Y40B10A.9 [Caenorhabditis elegans] 0.0
blast CAE66794 Hypothetical protein CBG12154 [Caenorhabditis briggsae] 0.0
blast CAA92221 Hypothetical protein F09C8.1 [Caenorhabditis elegans] ref|NP_510636.2| F09C8.1 [Caenorhabditis elegans] 2.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503563.1 1 381-403
Y40B10A.9 1 381-403
SNAP00000009381 1 373-395
GENEFINDER00000009384 1 391-413
Sequence
Target Sequence 
>C. ELEGANS:176828_S_AT
gtagtcctacgatcatctggaagcggaatctggagagatgcaagccatcagtcattggct
tgtaaaagtcagttggctcagtggaaagttcataataaattcaactacaactcggtttgg
aatcaggtcgaaactattgtcgagaagaactacagaaaaccccagttccatgtagaagtt
cttcctcttctcaaggacccagcactaaccaatttgcctgatggagtagatctcagtgct
cttggctatgattgtgctcatttctcggaacgagggctctctctgcttcatcttgctatt
tggaactcgctgttcactcgaaataaagcgagagaatcgcaattccgcccgacagcgtca
caagttttttgtccagatccttcttgcccattcttcagaacaccatccaactccgacatg
tgcatttggactggaacaatgcctgacgacgagttctattgggtggattatttgattttt
ataggaatttgggtccttctcatggtgctcttcgtgatcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGTCCTACGATCATCTGGAAGCG 527 455 685 Antisense
GAAAACCCCAGTTCCATGTAGAAGT 25 353 839 Antisense
GACCCAGCACTAACCAATTTGCCTG 669 381 880 Antisense
AGTAGATCTCAGTGCTCTTGGCTAT 329 63 909 Antisense
ATTTGGAACTCGCTGTTCACTCGAA 554 17 982 Antisense
GCCCGACAGCGTCACAAGTTTTTTG 186 281 1031 Antisense
AAGTTTTTTGTCCAGATCCTTCTTG 369 155 1046 Antisense
CCATTCTTCAGAACACCATCCAACT 697 269 1072 Antisense
CATCCAACTCCGACATGTGCATTTG 303 211 1088 Antisense
GGACTGGAACAATGCCTGACGACGA 85 525 1112 Antisense
TCTCATGGTGCTCTTCGTGATCATA 267 613 1182 Antisense
Sequence Source Affymetrix Proprietary Database