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[176825_at] 7TM chemoreceptor, srsx family

Description Y97E10B.9 /REP_DB=WormBase Gene ID /WP=CE26329 /GB=AAK71417.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 51      4grp_highest_8_8 > 47      4grp_high_8_8 > 12      6grp_total > 31      4grp_total > 13      6grp_cgc > 72      6grp_high1_sub > 03      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 98.2
(-1.5)
P 		65.3
(-2.9)
P 		63.1
(-3)
P 		202.3
(3)
P 		139
B 151.4
(3)
P 		115.6
(0.3)
P 		71.2
(-3)
P 		119.8
(0.6)
P 		80
C 88.4
(-1.2)
P 		68.5
(-1.9)
P 		38.2
(-3)
P 		203.4
(3)
P 		165
avr 112.7
(-0.2) 		83.1
(-1.7) 		57.5
(-3) 		175.2
(3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 56.1
(-1.4)
P 		81.4
(1.8)
P 		90.9
(3)
P 		48.7
(-2.3)
A 		47.5
(-2.5)
P 		43.3
(-3)
A 		48
B 55.4
(-3)
A 		69.2
(1.6)
P 		55.9
(-2.8)
M 		73.4
(3)
P 		68.8
(1.5)
P 		57.4
(-2.3)
P 		18
C 68.3
(3)
P 		46.3
(-1.9)
P 		58.2
(0.7)
P 		66
(2.5)
P 		41.5
(-3)
A 		50.2
(-1.1)
P 		27
avr 59.9
(0.2) 		65.6
(2.1) 		68.3
(3) 		62.7
(1.1) 		52.6
(-2.2) 		50.3
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 35.7
(3)
P 		14.2
(-3)
P 		16.5
(-2.4)
P 		29.6
(1.3)
P 		22
B 48.3
(3)
P 		28.5
(-0.7)
P 		16.5
(-3)
P 		25.5
(-1.3)
P 		32
C 29.3
(1.6)
P 		19.7
(-1.2)
P 		13.3
(-3)
P 		34.3
(3)
P 		21
avr 37.8
(3) 		20.8
(-1.6) 		15.4
(-3) 		29.8
(0.9) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 10.3
(-3)
P 		28.9
(3)
P 		19.8
(0.1)
P 		12.4
(-2.3)
A 		14.3
(-1.7)
P 		10.5
(-2.9)
A 		19
B 19.3
(-0.6)
A 		23
(0.9)
P 		13.6
(-3)
M 		19.4
(-0.6)
P 		28
(3)
P 		21.4
(0.2)
P 		14
C 25.3
(3)
P 		14.1
(-2.6)
P 		14.8
(-2.3)
P 		13.3
(-3)
P 		13.4
(-3)
A 		16.8
(-1.3)
P 		12
avr 18.3
(-0.2) 		22
(3) 		16.1
(-2.1) 		15
(-3) 		18.6
(0.1) 		16.2
(-2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176825_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12185
Sequence Type Exemplar sequence
Representative Public ID Y97E10B.9 NCBI
Target Description Y97E10B.9 /REP_DB=WormBase Gene ID /WP=CE26329 /GB=AAK71417.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072640(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072640 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-3) (srsx-3) mRNA, complete cds. 11/11 None
SNAP00000041700 ENSEMBL cdna:SNAP chromosome:CEL140:V:7938735:7939843:-1 11/11 None
GENEFINDER00000041711 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7938735:7939843:-1 11/11 None
Y97E10B.9 ENSEMBL cdna:known chromosome:CEL140:V:7938735:7939843:-1 gene:Y97E10B.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7938735-7939844(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srsx family
Gene Symbol srsx-3
Ensembl Y97E10B.9
Entrez Gene 190823 Entrez gene
SwissProt Q965R3 EMBL-EBI
WormBase CE26329 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71417 Serpentine receptor, class sx protein 3 [Caenorhabditis elegans] ref|NP_505041.1| Serpentine Receptor, class SX family member (srsx-3) [Caenorhabditis elegans] 1.0E-166
blast CAE64031 Hypothetical protein CBG08628 [Caenorhabditis briggsae] 1.0E-151
blast CAB04140 Hypothetical protein F20E11.2 [Caenorhabditis elegans] ref|NP_507410.2| Serpentine Receptor, class SX family member (srsx-2) [Caenorhabditis elegans] 1.0E-121
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505041.1 7 10-32,52-74,89-111,123-145,171-193,214-236,241-263
Y97E10B.9 7 10-32,52-74,89-111,123-145,171-193,214-236,241-263
SNAP00000041700 7 10-32,52-74,89-111,123-145,171-193,214-236,241-263
GENEFINDER00000041711 7 10-32,52-74,89-111,123-145,171-193,214-236,241-263
Sequence
Target Sequence 
>C. ELEGANS:176825_AT
gtcgtcgatcttttcattattgtcttcttcaccactttctaccgtcggattgaaaacaca
acttacacggctatgatgttattcataccttttgtctattcagcattcacagttgcgtgg
ggttttgtgaaaatggatgatgaattggtgatcttctgtaatccaccgatcagtcttcat
ccagttgtcagtagatggtggtcaatgtctaatgttgctctcaattcaatcactctctgc
ctgtttctgttcttaataattacttttcattttagaggaaagaaacaaaaaagcgacaca
agaaaactgatgaaacgtttgaaagtttccgtggttgtattcgttttctcttggtacatg
tgtactctcggtgtcgatttgtttgttgcaatcggaatgaccggatctgttcttgtgttt
ttccaaagcaatatggttttcttcgcacttctctgctatactcaaccatttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGTCGATCTTTTCATTATTGTCT 501 473 319 Antisense
TACCTTTTGTCTATTCAGCATTCAC 207 651 404 Antisense
TTCTGTAATCCACCGATCAGTCTTC 663 693 472 Antisense
ATCAGTCTTCATCCAGTTGTCAGTA 562 29 487 Antisense
GGTCAATGTCTAATGTTGCTCTCAA 667 503 518 Antisense
TCTGCCTGTTTCTGTTCTTAATAAT 679 609 554 Antisense
GTTGTATTCGTTTTCTCTTGGTACA 381 437 652 Antisense
TACATGTGTACTCTCGGTGTCGATT 497 643 673 Antisense
GACCGGATCTGTTCTTGTGTTTTTC 332 383 717 Antisense
AGCAATATGGTTTTCTTCGCACTTC 133 77 745 Antisense
TTCTCTGCTATACTCAACCATTTTA 100 693 767 Antisense
Sequence Source Affymetrix Proprietary Database