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[176824_at]

Description Y40B10A.4 /REP_DB=WormBase Gene ID /WP=CE26080 /GB=AAK70659.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 28.5
(-0.6)
A 		11.5
(-3)
A 		29.2
(-0.5)
A 		54.8
(3)
A 		43
B 38.6
(1.5)
P 		50.4
(3)
A 		35.3
(1.1)
A 		2.3
(-3)
A 		48
C 51.2
(-1.2)
P 		40.8
(-2.1)
A 		31.1
(-3)
A 		98.2
(3)
P 		67
avr 39.4
(-0.7) 		34.2
(-2.3) 		31.9
(-3) 		51.8
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 5.9
(-3)
A 		43.5
(2.9)
P 		43.9
(3)
A 		11.2
(-2.2)
A 		7.5
(-2.7)
A 		28.5
(0.6)
A 		38
B 28.4
(2.2)
A 		21.3
(0.2)
A 		9.9
(-3)
A 		31.1
(3)
A 		25.3
(1.4)
A 		21.1
(0.2)
A 		21
C 14.3
(-1.4)
A 		39
(3)
A 		5.2
(-3)
A 		26.5
(0.8)
A 		31.2
(1.6)
A 		24.1
(0.4)
A 		34
avr 16.2
(-3) 		34.6
(3) 		19.7
(-1.9) 		22.9
(-0.8) 		21.3
(-1.3) 		24.6
(-0.3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 10.4
(3)
A 		2.5
(-3)
A 		7.6
(0.9)
A 		8
(1.2)
A 		8
B 12.3
(2.9)
P 		12.4
(3)
A 		8.2
(0.9)
A 		0.5
(-3)
A 		12
C 17
(3)
P 		11.7
(-2.1)
A 		10.8
(-3)
A 		16.6
(2.6)
P 		6
avr 13.2
(3) 		8.9
(-2.4) 		8.9
(-2.4) 		8.4
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.1
(-3)
A 		15.5
(3)
P 		9.6
(0.5)
A 		2.8
(-2.3)
A 		2.3
(-2.5)
A 		6.9
(-0.6)
A 		14
B 9.9
(2.7)
A 		7.1
(0.6)
A 		2.4
(-3)
A 		8.2
(1.4)
A 		10.3
(3)
A 		7.9
(1.2)
A 		8
C 5.3
(-0.7)
A 		11.9
(3)
A 		1.3
(-3)
A 		5.3
(-0.7)
A 		10.1
(2)
A 		8.1
(0.8)
A 		11
avr 5.4
(-2.2) 		11.5
(3) 		4.4
(-3) 		5.4
(-2.2) 		7.6
(-0.3) 		7.6
(-0.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176824_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15211
Sequence Type Exemplar sequence
Representative Public ID Y40B10A.4 NCBI
Target Description Y40B10A.4 /REP_DB=WormBase Gene ID /WP=CE26080 /GB=AAK70659.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071155(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071155 NCBI Caenorhabditis elegans Y40B10A.4 (Y40B10A.4) mRNA, complete cds. 11/11 None
SNAP00000009373 ENSEMBL cdna:SNAP chromosome:CEL140:V:2038023:2042079:-1 11/11 None
GENEFINDER00000009389 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2038023:2042079:-1 11/11 None
Y40B10A.4 ENSEMBL cdna:known chromosome:CEL140:V:2038023:2041244:-1 gene:Y40B10A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2038022-2041244(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y40B10A.4
Entrez Gene 189787 Entrez gene
SwissProt Q965W6 EMBL-EBI
WormBase CE26080 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK70659 Hypothetical protein Y40B10A.4 [Caenorhabditis elegans] ref|NP_503556.1| Y40B10A.4 [Caenorhabditis elegans] 0.0
blast AAB70336 Hypothetical protein C38C3.7 [Caenorhabditis elegans] ref|NP_503432.1| C38C3.7 [Caenorhabditis elegans] 4.0E-90
blast AAB70336 Hypothetical protein C38C3.7 [Caenorhabditis elegans] ref|NP_503432.1| C38C3.7 [Caenorhabditis elegans] 3.0E-50
blast AAB70969 Hypothetical protein C08E3.10 [Caenorhabditis elegans] ref|NP_494015.2| C08E3.10 [Caenorhabditis elegans] 4.0E-25
blast AAB70969 Hypothetical protein C08E3.10 [Caenorhabditis elegans] ref|NP_494015.2| C08E3.10 [Caenorhabditis elegans] 4.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.4E-17
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.4E-13
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.4E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.4E-17
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.4E-13
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.4E-17
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.4E-13
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0013
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.4E-6
Sequence
Target Sequence 
>C. ELEGANS:176824_AT
gaggctgccgagttcatgacggttactgaactgaatatcaaaaacaggacaatttctgaa
cttgccgatttgttaccaattttccatataattcgggaactccgttatagtcaaaaattg
gacccagaagacaacgattattggaacctcgtcagaatgaagccatggaagaagctgtgg
gcgtttgagcaaacgaatacagtcactattccgatttaccactttctgcattcgaagaag
tttactgtttggttcgcatacttctcactgttccacttgcgcatggttaaaaaaatggct
gacgagaatgccaacttcaaatgggccttgatcagagcttataaatgtgaggatccgatt
ggactcgctaaaatattcgacccgacattcgtctcgtacgaaaacaagaaacacgccact
tttggttacaatcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCTGCCGAGTTCATGACGGTTA 402 405 1585 Antisense
GGACAATTTCTGAACTTGCCGATTT 46 527 1631 Antisense
TGCCGATTTGTTACCAATTTTCCAT 306 585 1647 Antisense
TACAGTCACTATTCCGATTTACCAC 82 643 1782 Antisense
GATTTACCACTTTCTGCATTCGAAG 250 429 1797 Antisense
TACTGTTTGGTTCGCATACTTCTCA 35 647 1827 Antisense
CACTGTTCCACTTGCGCATGGTTAA 7 199 1850 Antisense
GAATGCCAACTTCAAATGGGCCTTG 194 315 1890 Antisense
GTGAGGATCCGATTGGACTCGCTAA 397 483 1931 Antisense
AAATATTCGACCCGACATTCGTCTC 123 117 1955 Antisense
ACACGCCACTTTTGGTTACAATCCT 263 107 1995 Antisense
Sequence Source Affymetrix Proprietary Database