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[176823_at]

Description Y92C3A.3 /REP_DB=WormBase Gene ID /WP=CE26310 /GB=AAK31571.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 3.5
(-2.9)
A 		4.9
(-2.8)
A 		2.8
(-3)
A 		71.6
(3)
A 		69
B 12.8
(-2.1)
A 		3.5
(-3)
A 		3.1
(-3)
A 		69.3
(3)
A 		66
C 27
(-1.6)
A 		4.2
(-3)
A 		6
(-2.9)
A 		102.6
(3)
A 		98
avr 14.4
(-2.2) 		4.2
(-3) 		4
(-3) 		81.2
(3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 21.2
(2.2)
A 		12
(-0.4)
A 		3.9
(-2.8)
A 		23.9
(3)
A 		3.2
(-3)
A 		4
(-2.8)
A 		21
B 38.2
(3)
A 		5.5
(-2.4)
A 		3.1
(-2.8)
A 		7.6
(-2.1)
A 		6
(-2.3)
A 		1.9
(-3)
A 		36
C 11.6
(3)
A 		6.6
(0.1)
A 		4.1
(-1.4)
A 		5.4
(-0.6)
A 		2.3
(-2.5)
A 		1.4
(-3)
A 		10
avr 23.7
(3) 		8
(-1.4) 		3.7
(-2.6) 		12.3
(-0.2) 		3.8
(-2.6) 		2.4
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 1.3
(-2.6)
A 		1.1
(-2.8)
A 		0.7
(-3)
A 		10.5
(3)
A 		10
B 4.1
(-1.6)
A 		0.9
(-2.9)
A 		0.7
(-3)
A 		14.8
(3)
A 		14
C 9
(-0.1)
A 		1.2
(-3)
A 		2.1
(-2.7)
A 		17.3
(3)
A 		16
avr 4.8
(-1.3) 		1.1
(-3) 		1.2
(-3) 		14.2
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.9
(0.5)
A 		4.3
(1)
A 		0.8
(-3)
A 		6.1
(3)
A 		1
(-2.8)
A 		1
(-2.8)
A 		5
B 13.3
(3)
A 		1.8
(-2.5)
A 		0.7
(-3)
A 		2
(-2.4)
A 		2.5
(-2.1)
A 		0.7
(-3)
A 		13
C 4.3
(3)
A 		2
(-0.6)
A 		1
(-2.2)
A 		1.1
(-2.1)
A 		0.8
(-2.5)
A 		0.5
(-3)
A 		4
avr 7.2
(3) 		2.7
(-1.2) 		0.8
(-2.9) 		3.1
(-0.8) 		1.4
(-2.4) 		0.7
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176823_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8178
Sequence Type Exemplar sequence
Representative Public ID Y92C3A.3 NCBI
Target Description Y92C3A.3 /REP_DB=WormBase Gene ID /WP=CE26310 /GB=AAK31571.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064942(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064942 NCBI Caenorhabditis elegans Y92C3A.3 (Y92C3A.3) mRNA, complete cds. 11/11 None
SNAP00000001517 ENSEMBL cdna:SNAP chromosome:CEL140:III:1175096:1175573:-1 10/11 None
GENEFINDER00000001522 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1175096:1175573:-1 10/11 None
Y92C3A.3 ENSEMBL cdna:known chromosome:CEL140:III:1175096:1176542:-1 gene:Y92C3A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1175095-1176542(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y92C3A.3
Entrez Gene 190782 Entrez gene
SwissProt Q9BL23 EMBL-EBI
WormBase CE26310 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31571 Hypothetical protein Y92C3A.3 [Caenorhabditis elegans] ref|NP_497343.1| Y92C3A.3 [Caenorhabditis elegans] 2.0E-94
blast AAK31571 Hypothetical protein Y92C3A.3 [Caenorhabditis elegans] ref|NP_497343.1| Y92C3A.3 [Caenorhabditis elegans] 1.0E-78
Sequence
Target Sequence 
>C. ELEGANS:176823_AT
aaacgctcgaggcgtccgattttggacgatgatagctttatgatcaattcttgtttgatg
atgaaaacccctaagaaaatcgtattctgccggggaagtatcagggatattcagaggctt
gtgaaggagctcacaaaacttgtcgacgacatcatgaagctagaattcaacggaaaatct
atccaaaaagagtgcacgttaatgtcactaaaagtgctccgtctccaaaacgaatactca
cgcttcttctacctccacaactgtgatccgagaggatttacggataaaaagctgcaaatc
gtcaatctcggctataacaacttcacccggattatggatgctattgtgaaggtggagaga
gaacttattaaggattttttgccaatttacaatttgatcaaggcgcatcgatttgcgatc
catcagcttgttattgagcatcaggagaagccgtttggcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGCTCGAGGCGTCCGATTTTGG 402 125 31 Antisense
GAAAATCGTATTCTGCCGGGGAAGT 371 187 105 Antisense
GGAGCTCACAAAACTTGTCGACGAC 421 521 156 Antisense
AAAGTGCTCCGTCTCCAAAACGAAT 293 119 241 Antisense
AAACGAATACTCACGCTTCTTCTAC 338 127 258 Antisense
TTCTACCTCCACAACTGTGATCCGA 73 689 277 Antisense
AAAGCTGCAAATCGTCAATCTCGGC 159 125 318 Antisense
AATCTCGGCTATAACAACTTCACCC 88 171 334 Antisense
AACTTCACCCGGATTATGGATGCTA 130 137 349 Antisense
ATCGATTTGCGATCCATCAGCTTGT 46 35 437 Antisense
AGCATCAGGAGAAGCCGTTTGGCGC 667 77 467 Antisense
Sequence Source Affymetrix Proprietary Database