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[176819_s_at]

Description Y49C4A.8 /REP_DB=WormBase Gene ID /WP=CE26130 /GB=AAK72318.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 47      4grp_high_8_8 > 08      6grp_highest_nonorm > 60      6grp_total > 37      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 788
1 2 3 4 range
A 879.1
(3)
P 		171.2
(-3)
P 		322.4
(-1.7)
P 		538.9
(0.1)
P 		708
B 846.6
(3)
P 		182
(-3)
P 		329.3
(-1.7)
P 		575.1
(0.5)
P 		665
C 879.7
(3)
P 		91.9
(-3)
A 		379
(-0.8)
P 		544.7
(0.4)
P 		788
avr 868.5
(3) 		148.4
(-3) 		343.6
(-1.4) 		552.9
(0.4) 		720

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 423
1 2 3 4 5 6 range
A 444.3
(1.3)
P 		339.8
(-1.7)
P 		332.1
(-2)
P 		381.6
(-0.5)
P 		296.3
(-3)
P 		501.5
(3)
P 		205
B 566.1
(2.6)
P 		480.9
(1.3)
P 		270.5
(-2.1)
P 		215.8
(-3)
P 		284.2
(-1.9)
P 		589.1
(3)
P 		373
C 639
(3)
P 		473.2
(0.4)
P 		324.3
(-2)
P 		259.9
(-3)
P 		316.2
(-2.1)
P 		453.9
(0.1)
P 		379
avr 549.8
(3) 		431.3
(0.3) 		309
(-2.5) 		285.8
(-3) 		298.9
(-2.7) 		514.8
(2.2) 		264
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 294
1 2 3 4 range
A 320.1
(3)
P 		37.2
(-3)
P 		84.3
(-2)
P 		78.9
(-2.1)
P 		283
B 270
(3)
P 		45
(-3)
P 		76.3
(-2.2)
P 		122.5
(-0.9)
P 		225
C 291.2
(3)
P 		26.4
(-3)
A 		132.1
(-0.6)
P 		91.8
(-1.5)
P 		265
avr 293.8
(3) 		36.2
(-3) 		97.6
(-1.6) 		97.7
(-1.6) 		258

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 81.9
(-1.8)
P 		120.8
(2.8)
P 		72.3
(-3)
P 		96.8
(-0)
P 		89.4
(-0.9)
P 		122.1
(3)
P 		50
B 197
(2.2)
P 		160.1
(0.8)
P 		65.7
(-2.7)
P 		57.2
(-3)
P 		115.5
(-0.8)
P 		219.7
(3)
P 		163
C 236.9
(3)
P 		144.4
(-0)
P 		82.5
(-2)
P 		52.3
(-3)
P 		102.3
(-1.4)
P 		151.9
(0.2)
P 		185
avr 171.9
(3) 		141.8
(1.2) 		73.5
(-2.7) 		68.8
(-3) 		102.4
(-1) 		164.6
(2.6) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176819_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15607
Sequence Type Exemplar sequence
Representative Public ID Y49C4A.8 NCBI
Target Description Y49C4A.8 /REP_DB=WormBase Gene ID /WP=CE26130 /GB=AAK72318.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070897(11), NM_182348(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070897 NCBI Caenorhabditis elegans Y49C4A.8a (Y49C4A.8) mRNA, complete cds. 11/11 None
NM_182348 NCBI Caenorhabditis elegans Y49C4A.8b (Y49C4A.8) mRNA, complete cds. 11/11 None
SNAP00000005333 ENSEMBL cdna:SNAP chromosome:CEL140:V:695156:698970:-1 11/11 None
GENEFINDER00000005339 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:690705:699612:-1 11/11 None
Y49C4A.8a ENSEMBL cdna:known chromosome:CEL140:V:696353:698970:-1 gene:Y49C4A.8 11/11 None
Y49C4A.8b.1 ENSEMBL cdna:known chromosome:CEL140:V:696421:698986:-1 gene:Y49C4A.8 11/11 None
Y49C4A.8b.2 ENSEMBL cdna:known chromosome:CEL140:V:696421:699444:-1 gene:Y49C4A.8 11/11 None
Y49C4A.8b.3 ENSEMBL cdna:known chromosome:CEL140:V:696676:699444:-1 gene:Y49C4A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:696439-698970(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y49C4A.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503298 Y49C4A.8a [Caenorhabditis elegans] gb|AAK72318.1| Hypothetical protein Y49C4A.8a [Caenorhabditis elegans] 0.0
blast NP_872148 Y49C4A.8b [Caenorhabditis elegans] gb|AAO25979.1| Hypothetical protein Y49C4A.8b [Caenorhabditis elegans] 0.0
blast AAB42344 Udp-glucuronosyltransferase protein 28 [Caenorhabditis elegans] ref|NP_491437.1| C10H11.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.6E-28
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 8.7E-28
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 8.8E-6
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 8.7E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503298.1 1 498-520
Y49C4A.8a 1 498-520
SNAP00000005333 3 561-583,611-633,648-670
GENEFINDER00000005339 15 632-654,682-704,719-741,791-810,820-842,889-911,939-961,1040-1062,1085-1107,1119-1141,1161-1183,1196-1218,1255-1277,1299-1321,1331-1353
Sequence
Target Sequence 
>C. ELEGANS:176819_S_AT
gaaaccgacgatgtctcatttgctgatggagtttcaaatattcacttttcaaaatgggta
ccccaaacagctcttctcaatgatccccgactatcagtattcgtgactcatggaggactt
ggtagcacaatggaattggcctacagtggaaaaccggcagttgtcattccagtgttcgcc
gatcaaattcgaaatgccaacatgattgctagacatagaggtgttatttatctgcataaa
aactctatggaaaatgtgaaagttactcggaaagcattcaccgatgttctttttgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACCGACGATGTCTCATTTGCTG 14 359 1036 Antisense
TTCTCAATGATCCCCGACTATCAGT 161 691 1109 Antisense
GATCCCCGACTATCAGTATTCGTGA 339 417 1117 Antisense
TCAGTATTCGTGACTCATGGAGGAC 176 623 1129 Antisense
GGTAGCACAATGGAATTGGCCTACA 8 505 1156 Antisense
TGGCCTACAGTGGAAAACCGGCAGT 678 543 1172 Antisense
AACCGGCAGTTGTCATTCCAGTGTT 681 145 1187 Antisense
ATTCCAGTGTTCGCCGATCAAATTC 635 7 1201 Antisense
GAAATGCCAACATGATTGCTAGACA 69 363 1226 Antisense
AAAGTTACTCGGAAAGCATTCACCG 560 111 1294 Antisense
GCATTCACCGATGTTCTTTTTGATG 23 307 1309 Antisense
Sequence Source Affymetrix Proprietary Database