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[176818_s_at]

Description C02F12.7 /REP_DB=WormBase Gene ID /WP=CE03901 /GB=AAK39135.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 03      4grp_highest_8_8 > 40      4grp_high_8_8 > 50      6grp_highest_nonorm > 50      6grp_total > 15      4grp_total > 53      6grp_highest_sub > De      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 791
1 2 3 4 range
A 822.4
(2.7)
P 		858
(3)
P 		508.4
(-0.1)
P 		179.8
(-3)
P 		678
B 970.6
(3)
P 		650.4
(0.6)
P 		592.4
(0.1)
P 		184.8
(-3)
P 		786
C 966.8
(3)
P 		616.1
(0.1)
P 		610.6
(0.1)
P 		237.5
(-3)
P 		729
avr 919.9
(3) 		708.2
(1.2) 		570.5
(0.1) 		200.7
(-3) 		719

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 716
1 2 3 4 5 6 range
A 878.8
(3)
P 		840.7
(2.6)
P 		398.3
(-1.6)
P 		400
(-1.5)
P 		354.2
(-2)
P 		245.3
(-3)
P 		634
B 961.3
(3)
P 		609.9
(-0.1)
P 		586.8
(-0.4)
P 		434.5
(-1.7)
P 		291.6
(-3)
P 		295.5
(-3)
P 		670
C 713.4
(1.6)
P 		848.8
(3)
P 		571.7
(0.1)
P 		380
(-1.8)
P 		266.3
(-3)
P 		307.2
(-2.6)
P 		583
avr 851.2
(3) 		766.5
(2.1) 		518.9
(-0.5) 		404.8
(-1.7) 		304
(-2.8) 		282.7
(-3) 		569
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 294
1 2 3 4 range
A 299.4
(3)
P 		186.3
(0.5)
P 		132.9
(-0.7)
P 		26.3
(-3)
P 		273
B 309.5
(3)
P 		160.6
(-0.3)
P 		137.3
(-0.8)
P 		39.4
(-3)
P 		270
C 320
(3)
P 		177.1
(-0.1)
P 		212.8
(0.7)
P 		40
(-3)
P 		280
avr 309.6
(3) 		174.7
(0.1) 		161
(-0.2) 		35.2
(-3) 		274

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 162
(-0.4)
P 		299
(3)
P 		86.7
(-2.3)
P 		101.4
(-2)
P 		106.9
(-1.8)
P 		59.7
(-3)
P 		239
B 334.5
(3)
P 		203
(-0.5)
P 		142.5
(-2.1)
P 		115.1
(-2.9)
P 		118.5
(-2.8)
P 		110.2
(-3)
P 		224
C 264.4
(3)
P 		259
(2.8)
P 		145.5
(-0.8)
P 		76.4
(-3)
P 		86.2
(-2.7)
P 		102.9
(-2.2)
P 		188
avr 253.6
(3) 		253.7
(3) 		124.9
(-1.7) 		97.6
(-2.8) 		103.9
(-2.5) 		90.9
(-3) 		163
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176818_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18088
Sequence Type Exemplar sequence
Representative Public ID C02F12.7 NCBI
Target Description C02F12.7 /REP_DB=WormBase Gene ID /WP=CE03901 /GB=AAK39135.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076234(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076234 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-278) (tag-278) mRNA, complete cds. 11/11 None
SNAP00000032663 ENSEMBL cdna:SNAP chromosome:CEL140:X:3684352:3689131:-1 11/11 None
GENEFINDER00000032667 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3684352:3689640:-1 11/11 None
C02F12.7 ENSEMBL cdna:known chromosome:CEL140:X:3684215:3688555:-1 gene:C02F12.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3684352-3688556(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-278
Ensembl C02F12.7
Entrez Gene 180658 Entrez gene
SwissProt Q11102 EMBL-EBI
WormBase CE03901 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605688_AT similar to Temporarily Assigned Gene name family member (tag-278) cfa
CANINE_2:CFA.20379.1.S1_S_AT similar to Temporarily Assigned Gene name family member (tag-278) cfa
CHICKEN:GGAAFFX.24538.1.S1_AT similar to chromosome 6 open reading frame 60 gga
CHICKEN:GGAAFFX.24538.1.S1_S_AT similar to chromosome 6 open reading frame 60 gga
HG-U133_PLUS_2:220150_S_AT chromosome 6 open reading frame 60 hs
HG-U133A:220150_S_AT chromosome 6 open reading frame 60 hs
HG-U133A_2:220150_S_AT chromosome 6 open reading frame 60 hs
HU35KSUBB:RC_F04649_AT chromosome 6 open reading frame 60 hs
HU35KSUBC:RC_AA280218_AT chromosome 6 open reading frame 60 hs
U133_X3P:HS2.351826.1.S1_3P_S_AT chromosome 6 open reading frame 60 hs
HG-U95B:43558_AT chromosome 6 open reading frame 60 hs
HG-U95B:52787_AT chromosome 6 open reading frame 60 hs
HG-U95B:59663_AT chromosome 6 open reading frame 60 hs
HG-U133_PLUS_2:1558523_AT Chromosome 6 open reading frame 60 hs
HG-U95D:77435_AT Chromosome 6 open reading frame 60 hs
HU35KSUBD:RC_AA490619_AT Chromosome 6 open reading frame 60 hs
RAE230B:1391944_AT similar to Hypothetical protein C6orf60 (predicted) rn
RAT230_2:1391944_AT similar to Hypothetical protein C6orf60 (predicted) rn
RAE230B:1385524_AT similar to Hypothetical protein C6orf60 (predicted) rn
RAT230_2:1385524_AT similar to Hypothetical protein C6orf60 (predicted) rn
RAE230B:1398704_AT Similar to Hypothetical protein C6orf60 (predicted) rn
RAT230_2:1398704_AT Similar to Hypothetical protein C6orf60 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK39135 Temporarily assigned gene name protein 278 [Caenorhabditis elegans] ref|NP_508635.1| Temporarily Assigned Gene name family member (tag-278) [Caenorhabditis elegans] sp|Q11102|YL17_CAEEL Hypothetical protein C02F12.7 in chromosome X 0.0
blast CAE68471 Hypothetical protein CBG14270 [Caenorhabditis briggsae] 0.0
blast CAI21022 novel protein [Danio rerio] emb|CAI11547.1| novel protein [Danio rerio] emb|CAI21303.1| novel protein [Danio rerio] 2.0E-55
Sequence
Target Sequence 
>C. ELEGANS:176818_S_AT
gaagtcgaacaagttttccaagccgataaggaatccaaatggaaagagcaaattgaggat
ttggaaaatgcacttcaacgaaaaaacgagctgatccaacaattgcaagaccgtcagact
gatgaatcaacctctgagccccataccaaaaaacgaatgagtatcacttcccatggtgtc
tttcaaaattttgtgagtcagatgaaagataaaagagaagaggctagtgaaaaaagaaca
agaaaagaagcggagaaaaaggctgaaaaggagaaagagaaagctgaaaaggcagccaaa
gaagctgcaaaagagttggcccgtgaaaagtcgcccgctcgtgccaagtccccttcaatt
ctgacaagattacgagatcgtagtccagcgaaatcgaagtcggacaacctcgaatcgact
ccatcttcttctagcagaaatctactttctccatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTCGAACAAGTTTTCCAAGCCG 3 321 2848 Antisense
AAAACGAGCTGATCCAACAATTGCA 583 131 2930 Antisense
CCAACAATTGCAAGACCGTCAGACT 145 275 2943 Antisense
GACTGATGAATCAACCTCTGAGCCC 437 375 2964 Antisense
CTCTGAGCCCCATACCAAAAAACGA 106 231 2979 Antisense
AACGAATGAGTATCACTTCCCATGG 372 143 2999 Antisense
ACTTCCCATGGTGTCTTTCAAAATT 39 105 3013 Antisense
CCAAGTCCCCTTCAATTCTGACAAG 374 275 3191 Antisense
ACGAGATCGTAGTCCAGCGAAATCG 608 93 3219 Antisense
TCGGACAACCTCGAATCGACTCCAT 583 605 3247 Antisense
AGCAGAAATCTACTTTCTCCATTTG 464 77 3280 Antisense
Sequence Source Affymetrix Proprietary Database