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[176816_at]

Description Y10G11A.B /REP_DB=WormBase Gene ID /WP=CE26437 /GB=CAC44302.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 08      4grp_highest_8_8 > 50      4grp_high_8_8 > 33      6grp_highest_nonorm > 71      6grp_total > 19      4grp_total > 46      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 407
1 2 3 4 range
A 577.9
(3)
P 		234.3
(-2.9)
P 		227
(-3)
P 		228.8
(-3)
P 		351
B 596.4
(3)
P 		284.9
(-1.6)
P 		259.3
(-2)
P 		189.6
(-3)
P 		407
C 536.4
(3)
P 		365.1
(-0.3)
P 		250.7
(-2.4)
P 		220.3
(-3)
P 		316
avr 570.2
(3) 		294.8
(-1.6) 		245.7
(-2.4) 		212.9
(-3) 		357

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 381.5
(3)
P 		277.6
(-1.4)
P 		239.1
(-3)
P 		373.5
(2.7)
P 		359.3
(2.1)
P 		281.4
(-1.2)
P 		142
B 362.9
(3)
P 		320.6
(-0.6)
P 		307.8
(-1.7)
P 		330.8
(0.2)
P 		293.1
(-3)
P 		318.4
(-0.8)
P 		70
C 437.2
(3)
P 		292.2
(-3)
P 		337
(-1.1)
P 		335.3
(-1.2)
P 		360.5
(-0.2)
P 		347.4
(-0.7)
P 		145
avr 393.9
(3) 		296.8
(-2.9) 		294.6
(-3) 		346.5
(0.1) 		337.6
(-0.4) 		315.7
(-1.7) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 177
1 2 3 4 range
A 210.4
(3)
P 		50.9
(-2.4)
P 		59.3
(-2.1)
P 		33.5
(-3)
P 		177
B 190.2
(3)
P 		70.4
(-1.8)
P 		60.1
(-2.2)
P 		40.4
(-3)
P 		150
C 177.6
(3)
P 		105
(-0.1)
P 		87.4
(-0.9)
P 		37.2
(-3)
P 		140
avr 192.7
(3) 		75.4
(-1.5) 		68.9
(-1.8) 		37
(-3) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 70.3
(-1.1)
P 		98.7
(2)
P 		52.1
(-3)
P 		94.7
(1.5)
P 		108.4
(3)
P 		68.5
(-1.3)
P 		56
B 126.3
(3)
P 		106.7
(0.7)
P 		74.7
(-3)
P 		87.6
(-1.5)
P 		119.1
(2.2)
P 		118.7
(2.1)
P 		52
C 162.1
(3)
P 		89.1
(-1.6)
P 		85.8
(-1.8)
P 		67.4
(-3)
P 		116.7
(0.1)
P 		116.3
(0.1)
P 		95
avr 119.6
(3) 		98.2
(0.4) 		70.9
(-3) 		83.2
(-1.5) 		114.7
(2.4) 		101.2
(0.7) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176816_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19106
Sequence Type Exemplar sequence
Representative Public ID Y10G11A.B NCBI
Target Description Y10G11A.B /REP_DB=WormBase Gene ID /WP=CE26437 /GB=CAC44302.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000016281 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16427149:16436715:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016277 8/11 Cross Hyb Matching Probes None
SNAP00000016278 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16427298-16429571(+) 87.75 87.75
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE68168 Hypothetical protein CBG13827 [Caenorhabditis briggsae] 6.0E-80
blast CAE64348 Hypothetical protein CBG09035 [Caenorhabditis briggsae] 4.0E-34
blast NP_741161 F25B5.3d [Caenorhabditis elegans] gb|AAM22066.1| Hypothetical protein F25B5.3d [Caenorhabditis elegans] 5.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR006434 EMBL-EBI HAD-superfamily subfamily IE hydrolase 1.5E-63
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000016281 1 34-53
Sequence
Target Sequence 
>C. ELEGANS:176816_AT
gggcaagcagcggtggaagtggtcaatagacaacgccgacataatgatgaaaaagatgac
gaatcacgcggtgccattcatcattttttccgccggaatcggaacaatcatcgaaatgta
cctccgacataaattcggccgagtcgaatcgaacacccatgtcgtgtcgaatatgatggg
attcgacgacgacggatatgttaactcgttctccgatcctctgatccatgttttctgcaa
gaattcatcggttatgccggcggatcgcacgttttccgagcaaattgagggaaggaagaa
tgtgattctgttgggtgatagtgttggagacgcttttatggatgttggtgttgaggagga
acaagtttcactcaaaatcggatttgttaatcatgatgctgacaagctcgtcgacaaata
tctcaacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCAAGCAGCGGTGGAAGTGGTCA 341 493 54 Antisense
AGATGACGAATCACGCGGTGCCATT 93 67 107 Antisense
CGGTGCCATTCATCATTTTTTCCGC 151 245 122 Antisense
GTACCTCCGACATAAATTCGGCCGA 536 23 171 Antisense
TCGGCCGAGTCGAATCGAACACCCA 314 605 188 Antisense
ATCGAACACCCATGTCGTGTCGAAT 179 35 201 Antisense
ATATGTTAACTCGTTCTCCGATCCT 481 21 249 Antisense
TCCTCTGATCCATGTTTTCTGCAAG 412 593 270 Antisense
TCATCGGTTATGCCGGCGGATCGCA 574 621 298 Antisense
TCATGATGCTGACAAGCTCGTCGAC 388 619 444 Antisense
AGCTCGTCGACAAATATCTCAACTA 283 81 458 Antisense
Sequence Source Affymetrix Proprietary Database