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[176815_at]

Description Y10G11A.A /REP_DB=WormBase Gene ID /WP=CE26436 /GB=CAC44301.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 25      6grp_total > 07      4grp_total > 38      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 582
1 2 3 4 range
A 750.8
(3)
P 		481.1
(-0.7)
P 		311.3
(-3)
P 		502.2
(-0.4)
P 		440
B 823.8
(3)
P 		333.2
(-2.1)
P 		242.3
(-3)
P 		491.8
(-0.4)
M 		582
C 801
(3)
P 		409.6
(-2)
P 		331.8
(-3)
P 		394.2
(-2.2)
A 		469
avr 791.9
(3) 		408
(-1.6) 		295.1
(-3) 		462.7
(-1) 		497

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 260
1 2 3 4 5 6 range
A 402.8
(0.5)
P 		473.7
(2.8)
P 		374.6
(-0.4)
P 		480.8
(3)
P 		292.4
(-3)
P 		356.9
(-0.9)
M 		188
B 404.8
(3)
P 		371.2
(1.4)
P 		292.3
(-2.3)
P 		277.9
(-3)
P 		374.7
(1.6)
P 		331.7
(-0.5)
A 		127
C 537.4
(3)
P 		335.1
(-2.7)
P 		374.5
(-1.6)
P 		350.3
(-2.3)
P 		327.1
(-2.9)
P 		324.4
(-3)
M 		213
avr 448.3
(3) 		393.3
(0.2) 		347.1
(-2.2) 		369.7
(-1) 		331.4
(-3) 		337.7
(-2.7) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 217
1 2 3 4 range
A 273.4
(3)
P 		104.4
(-2.1)
P 		81.4
(-2.8)
P 		73.5
(-3)
P 		200
B 262.7
(3)
P 		82.3
(-2.2)
P 		56.2
(-3)
P 		104.8
(-1.6)
M 		207
C 265.1
(3)
P 		117.8
(-1.5)
P 		115.6
(-1.5)
P 		66.5
(-3)
A 		199
avr 267.1
(3) 		101.5
(-2.4) 		84.4
(-2.9) 		81.6
(-3) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 74.2
(-3)
P 		168.5
(3)
P 		81.6
(-2.5)
P 		121.9
(0)
P 		88.2
(-2.1)
P 		86.9
(-2.2)
M 		94
B 140.8
(2.2)
P 		123.5
(0.9)
P 		71
(-3)
P 		73.6
(-2.8)
P 		152.2
(3)
P 		123.7
(0.9)
A 		81
C 199.2
(3)
P 		102.3
(-1.5)
P 		95.3
(-1.8)
P 		70.5
(-3)
P 		105.8
(-1.4)
P 		108.6
(-1.2)
M 		129
avr 138.1
(3) 		131.4
(2.3) 		82.6
(-3) 		88.7
(-2.3) 		115.4
(0.5) 		106.4
(-0.4) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176815_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19101
Sequence Type Exemplar sequence
Representative Public ID Y10G11A.A NCBI
Target Description Y10G11A.A /REP_DB=WormBase Gene ID /WP=CE26436 /GB=CAC44301.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171424(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171424 NCBI Caenorhabditis elegans Y10G11A.1 (Y10G11A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000016280 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16424611:16426324:1 11/11 None
Y10G11A.1 ENSEMBL cdna:known chromosome:CEL140:IV:16424611:16425940:1 gene:Y10G11A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016277 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16424616-16425946(+) 96.46 100.0
Public Domain and Genome References
Gene Title
Ensembl Y10G11A.1
Entrez Gene 178457 Entrez gene
SwissProt Q95ZJ9 EMBL-EBI
WormBase CE26436 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4182 carboxypeptidase A activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC44301 Hypothetical protein Y10G11A.1 [Caenorhabditis elegans] ref|NP_741496.1| Y10G11A.1 [Caenorhabditis elegans] 1.0E-114
blast CAC44301 Hypothetical protein Y10G11A.1 [Caenorhabditis elegans] ref|NP_741496.1| Y10G11A.1 [Caenorhabditis elegans] 1.0E-112
blast CAE68168 Hypothetical protein CBG13827 [Caenorhabditis briggsae] 5.0E-69
blast CAE68168 Hypothetical protein CBG13827 [Caenorhabditis briggsae] 8.0E-69
blast NP_741161 F25B5.3d [Caenorhabditis elegans] gb|AAM22066.1| Hypothetical protein F25B5.3d [Caenorhabditis elegans] 5.0E-25
blast NP_741161 F25B5.3d [Caenorhabditis elegans] gb|AAM22066.1| Hypothetical protein F25B5.3d [Caenorhabditis elegans] 7.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR006434 EMBL-EBI HAD-superfamily subfamily IE hydrolase 2.0E-35
Sequence
Target Sequence 
>C. ELEGANS:176815_AT
tccctaccacaagtccacgttaaggacattaaatcactaactgataagcttcaaaacatc
gtctcgggcggtgcagatcaactgatggtcatttcggatttcgactttacactgtccaga
tttgccgataaatccggcaatcgatgctcatcgtgctattgtgtattcgatagtgctgtt
ggaacgaataatccggaatggtgtcggaaatttgtcggattgtatcataaatatggtcca
attgagcacgatcattctctgagcattgaggagaaggttccgtttatggaagcatggtgg
caacaatctcacggactaattattcaaggaggattcaagaaacaggctattgatgactat
gtggcacattgtaatattcaattgaggtactgcaacatgtgtgcttacctgctacgtggc
cgagaaatgcggaaaaattcggccaccacaagttttttcgcggcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCTACCACAAGTCCACGTTAAGG 63 287 46 Antisense
TCAAAACATCGTCTCGGGCGGTGCA 631 627 96 Antisense
TCGGATTTCGACTTTACACTGTCCA 573 603 139 Antisense
TACACTGTCCAGATTTGCCGATAAA 514 637 153 Antisense
AAATCCGGCAATCGATGCTCATCGT 364 117 175 Antisense
GATGCTCATCGTGCTATTGTGTATT 62 415 188 Antisense
GAGCACGATCATTCTCTGAGCATTG 111 389 289 Antisense
CAACATGTGTGCTTACCTGCTACGT 469 187 438 Antisense
ACCTGCTACGTGGCCGAGAAATGCG 583 87 452 Antisense
AATGCGGAAAAATTCGGCCACCACA 586 159 471 Antisense
GCCACCACAAGTTTTTTCGCGGCCA 203 279 487 Antisense
Sequence Source Affymetrix Proprietary Database