[Home] | [Total List]

[176814_at]

Description R05D8.12 /REP_DB=WormBase Gene ID /WP=CE25968 /GB=AAK72088.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 34      6grp_cgc > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 5.6
(-2.5)
A 		44.9
(3)
A 		1.8
(-3)
A 		9.7
(-1.9)
A 		43
B 5.1
(0.4)
A 		4.5
(-0.5)
A 		2.8
(-3)
A 		6.9
(3)
A 		4
C 3.5
(-3)
A 		8.5
(-2)
A 		15.3
(-0.7)
A 		34
(3)
P 		31
avr 4.7
(-3) 		19.3
(3) 		6.6
(-2.2) 		16.9
(2) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 6.2
(-0.7)
A 		2.6
(-3)
A 		4.4
(-1.8)
A 		3.6
(-2.4)
A 		11.9
(3)
A 		3.2
(-2.6)
A 		9
B 3.6
(-2.8)
A 		20.5
(2.9)
A 		20.7
(3)
A 		5.1
(-2.3)
A 		3.1
(-3)
A 		7.6
(-1.5)
A 		18
C 13.4
(3)
A 		3.6
(-1.9)
A 		6.7
(-0.4)
A 		4.8
(-1.3)
A 		1.4
(-3)
A 		9.5
(1.1)
A 		12
avr 7.7
(0.1) 		8.9
(1.3) 		10.6
(3) 		4.5
(-3) 		5.5
(-2) 		6.8
(-0.7) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2
(-2)
A 		9.7
(3)
A 		0.5
(-3)
A 		1.4
(-2.4)
A 		9
B 1.6
(3)
A 		1.1
(-0.3)
A 		0.7
(-3)
A 		1.5
(2.3)
A 		1
C 1.2
(-3)
A 		2.4
(-1.4)
A 		5.3
(2.5)
A 		5.7
(3)
P 		5
avr 1.6
(-3) 		4.4
(3) 		2.2
(-1.7) 		2.9
(-0.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.1
(-2.4)
A 		0.9
(-2.8)
A 		1
(-2.6)
A 		0.9
(-2.8)
A 		3.6
(3)
A 		0.8
(-3)
A 		3
B 1.3
(-2.9)
A 		6.8
(3)
A 		5
(1.1)
A 		1.4
(-2.8)
A 		1.2
(-3)
A 		2.8
(-1.3)
A 		6
C 5
(3)
A 		1.1
(-2.1)
A 		1.7
(-1.3)
A 		1
(-2.2)
A 		0.4
(-3)
A 		3.2
(0.7)
A 		5
avr 2.5
(1.7) 		2.9
(3) 		2.6
(2) 		1.1
(-3) 		1.7
(-1) 		2.3
(1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176814_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15096
Sequence Type Exemplar sequence
Representative Public ID R05D8.12 NCBI
Target Description R05D8.12 /REP_DB=WormBase Gene ID /WP=CE25968 /GB=AAK72088.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R05D8.12 ENSEMBL cdna:pseudogene chromosome:CEL140:V:2753133:2754985:-1 gene:R05D8.12 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009147 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2753132-2754184(-) 100.0 100.0
Public Domain and Genome References
Ensembl R05D8.12
Sequence
Target Sequence 
>C. ELEGANS:176814_AT
tatgtagtgtctgttcttccattgcagttgagttccctatcccattttataccaatctct
cattattttggaaccgctgctcagactgtctacgaaatttccaatttatctcatttccta
aacgctctcaatcggtgctgtgcagtatttatgccgttatggtatactcaaatttttagt
aacccaaaaactatattctatcgtaatttcctatggattttttcaataatatttaccata
tcaatctgtgaaattttccaatgttttctagtgtatgcgccaaatttttggaattttcaa
tttgtgatcgacccagtttgcgaggatataacttggtatttagactttgtttttaatggt
tcaataatgctagtaacgttatttattgaccttttggttgcttataaggcaagaaaacac
tctaaagccctccccgttggatccgaatatttaaaagttttacgaaaacgggattggaac
tttgtgcggcaaacttttttgcaggaatcgcaaatttttgcggtagcaataattatggca
tcaaatgacgagttacgagatgtatataagaaaaagtccgtgatggcacattcacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGTAGTGTCTGTTCTTCCATTGC 89 657 79 Antisense
GTTCTTCCATTGCAGTTGAGTTCCC 127 445 91 Antisense
CTAAACGCTCTCAATCGGTGCTGTG 696 225 196 Antisense
GGTGCTGTGCAGTATTTATGCCGTT 521 501 212 Antisense
TATGCCGTTATGGTATACTCAAATT 198 657 228 Antisense
ATATTCTATCGTAATTTCCTATGGA 431 19 271 Antisense
TCCAATGTTTTCTAGTGTATGCGCC 649 587 335 Antisense
GTGATCGACCCAGTTTGCGAGGATA 681 483 382 Antisense
TTATTGACCTTTTGGTTGCTTATAA 13 679 461 Antisense
AACGGGATTGGAACTTTGTGCGGCA 97 143 545 Antisense
AAAGTCCGTGATGGCACATTCACCT 675 121 651 Antisense
Sequence Source Affymetrix Proprietary Database