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[176813_at] 7TM chemoreceptor, srw family

Description H27D07.5 /REP_DB=WormBase Gene ID /WP=CE17984 /GB=AAG24156.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 13      6grp_total_sub > Hat      6grp_cgc > 64      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 40.1
(3)
A 		14.2
(-2.8)
A 		13.4
(-3)
A 		18.3
(-1.9)
A 		27
B 57.6
(1.2)
A 		30.3
(-1.8)
A 		18.9
(-3)
A 		73.7
(3)
A 		55
C 18.1
(-3)
A 		23.1
(-2.6)
A 		17.9
(-3)
A 		92.7
(3)
A 		75
avr 38.6
(-0.1) 		22.5
(-2.2) 		16.7
(-3) 		61.6
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 12.2
(-1.5)
A 		11
(-2.6)
A 		14.3
(0.5)
A 		13.5
(-0.2)
A 		16.9
(3)
A 		10.6
(-3)
A 		6
B 12.9
(-3)
A 		20.6
(-1.2)
A 		16.3
(-2.2)
A 		17
(-2.1)
A 		13.8
(-2.8)
A 		38.9
(3)
P 		26
C 10.7
(-2.4)
A 		35.5
(3)
A 		9.7
(-2.6)
A 		12.9
(-1.9)
A 		32.5
(2.4)
A 		7.8
(-3)
A 		28
avr 11.9
(-3) 		22.4
(3) 		13.4
(-2.1) 		14.5
(-1.5) 		21.1
(2.3) 		19.1
(1.1) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 14.6
(3)
A 		3.1
(-2.8)
A 		3.5
(-2.6)
A 		2.7
(-3)
A 		12
B 18.4
(3)
A 		7.5
(-1.7)
A 		4.4
(-3)
A 		15.7
(1.8)
A 		14
C 6
(-3)
A 		6.6
(-2.6)
A 		6.2
(-2.9)
A 		15.6
(3)
A 		10
avr 13
(3) 		5.7
(-2.3) 		4.7
(-3) 		11.3
(1.8) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.3
(-3)
A 		3.9
(0.4)
A 		3.1
(-1.3)
A 		3.4
(-0.6)
A 		5.1
(3)
A 		2.6
(-2.4)
A 		3
B 4.5
(-2.7)
A 		6.8
(-1.4)
A 		4
(-3)
A 		4.5
(-2.7)
A 		5.6
(-2.1)
A 		14.5
(3)
P 		11
C 4
(-1.9)
A 		10.8
(3)
A 		2.5
(-3)
A 		2.6
(-2.9)
A 		10.5
(2.8)
A 		2.6
(-2.9)
A 		8
avr 3.6
(-2.4) 		7.2
(3) 		3.2
(-3) 		3.5
(-2.6) 		7.1
(2.9) 		6.6
(2.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176813_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15008
Sequence Type Exemplar sequence
Representative Public ID H27D07.5 NCBI
Target Description H27D07.5 /REP_DB=WormBase Gene ID /WP=CE17984 /GB=AAG24156.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071401(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071401 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-122) (srw-122) mRNA, complete cds. 9/11 None
H27D07.5 ENSEMBL cdna:known chromosome:CEL140:V:2950539:2952029:-1 gene:H27D07.5 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2950200-2952029(-) 95.03 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-122
Ensembl H27D07.5
Entrez Gene 186790 Entrez gene
SwissProt O61912 EMBL-EBI
WormBase CE34574 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24156 Serpentine receptor, class w protein 122 [Caenorhabditis elegans] ref|NP_503802.2| Serpentine Receptor, class W family member (srw-122) [Caenorhabditis elegans] 0.0
blast AAQ01536 Serpentine receptor, class w protein 123 [Caenorhabditis elegans] ref|NP_001023706.1| Serpentine Receptor, class W family member (srw-123) [Caenorhabditis elegans] 1.0E-170
blast AAG24161 Serpentine receptor, class w protein 121 [Caenorhabditis elegans] ref|NP_503814.2| Serpentine Receptor, class W family member (srw-121) [Caenorhabditis elegans] 1.0E-124
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503802.2 7 38-60,67-89,99-121,161-178,226-248,272-294,309-331
H27D07.5 7 38-60,67-89,99-121,161-178,226-248,272-294,309-331
Sequence
Target Sequence 
>C. ELEGANS:176813_AT
ttgcttctgatcgttacatgcctacttgtatggaacttattcaaaaccagtaaaaagaaa
gcaaaaatgtcatctgtaccaaacaataggaattctcgtggaaaaactggactagtgtta
tgcgtagcaattatgtttttcatagtccagtttccatatggactaagcgtgggtagtgcg
gggatcttcatacttgcacccggtgcacacaacatgcttaatcaatttggatatattttc
tctatgttaataacattgaacacatgcactcatctctttgtttgtctatttatgtcctcc
cagtatcgaagtacaactattcacgtcttcacctgtggatgtatctaccctaatgctctc
aaaaaatattttctccttatttctcagaataaagtttttttcgggaaaacgtctcaaatc
attcgcgtgatcgcaaaaattcaaaaaataacattagacacgaaaaaaagtttctggagc
aagtattcaataacttattttaatgaaaaatggcttttgaaactccgagccgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCTTCTGATCGTTACATGCCTAC 484 703 715 Antisense
TGTTTTTCATAGTCCAGTTTCCATA 173 561 848 Antisense
TGCGGGGATCTTCATACTTGCACCC 372 579 891 Antisense
ACCCGGTGCACACAACATGCTTAAT 270 91 912 Antisense
CACATGCACTCATCTCTTTGTTTGT 572 195 975 Antisense
TTTGTTTGTCTATTTATGTCCTCCC 270 667 991 Antisense
TTATGTCCTCCCAGTATCGAAGTAC 529 679 1004 Antisense
AGTACAACTATTCACGTCTTCACCT 22 63 1024 Antisense
TCTTCACCTGTGGATGTATCTACCC 660 615 1040 Antisense
GTATCTACCCTAATGCTCTCAAAAA 658 453 1055 Antisense
ATGGCTTTTGAAACTCCGAGCCGCT 241 53 1224 Antisense
Sequence Source Affymetrix Proprietary Database