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[176811_s_at] --- /// BTB (also known as BR-C/Ttk) domain.

Description H31G24.3 /REP_DB=WormBase Gene ID /WP=CE23834 /GB=AAK21416.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 07      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 17
(3)
A 		3.8
(-3)
A 		11.3
(0.4)
A 		10.1
(-0.1)
A 		13
B 1.5
(-3)
A 		2.8
(0)
A 		4.1
(3)
A 		3.8
(2.3)
A 		3
C 1.2
(-3)
A 		1.8
(-2.5)
A 		1.4
(-2.8)
A 		8.3
(3)
A 		7
avr 6.6
(2) 		2.8
(-3) 		5.6
(0.7) 		7.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 0.9
(-3)
A 		1.6
(-3)
A 		2
(-3)
A 		13.4
(-2.4)
A 		44.7
(-1)
A 		135.5
(3)
P 		135
B 4
(-2.8)
A 		11.6
(-2.4)
A 		0.7
(-3)
A 		8.7
(-2.6)
A 		63.8
(0.3)
P 		113.9
(3)
P 		113
C 3.1
(-3)
A 		5.4
(-2.8)
A 		15.4
(-2.2)
A 		2.6
(-3)
A 		79.2
(2.1)
A 		93.4
(3)
P 		91
avr 2.7
(-3) 		6.2
(-2.8) 		6
(-2.8) 		8.2
(-2.7) 		62.6
(0.2) 		114.3
(3) 		112
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 6.2
(3)
A 		0.8
(-3)
A 		3
(-0.6)
A 		1.5
(-2.2)
A 		5
B 0.5
(-3)
A 		0.7
(-0)
A 		0.9
(3)
A 		0.8
(1.5)
A 		0
C 0.4
(-3)
A 		0.5
(-2.4)
A 		0.5
(-2.4)
A 		1.4
(3)
A 		1
avr 2.4
(3) 		0.7
(-3) 		1.5
(-0.2) 		1.2
(-1.2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 0.2
(-3)
A 		0.6
(-2.9)
A 		0.4
(-3)
A 		3.4
(-2.4)
A 		13.5
(-0.6)
A 		33
(3)
P 		33
B 1.4
(-2.8)
A 		3.9
(-2.5)
A 		0.2
(-3)
A 		2.3
(-2.7)
A 		25.9
(0.6)
P 		42.5
(3)
P 		42
C 1.1
(-2.9)
A 		1.6
(-2.8)
A 		3.9
(-2.3)
A 		0.5
(-3)
A 		25.6
(1.9)
A 		31.3
(3)
P 		31
avr 0.9
(-3) 		2
(-2.8) 		1.5
(-2.9) 		2.1
(-2.8) 		21.7
(0.6) 		35.6
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176811_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1129
Sequence Type Exemplar sequence
Representative Public ID H31G24.3 NCBI
Target Description H31G24.3 /REP_DB=WormBase Gene ID /WP=CE23834 /GB=AAK21416.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069647(11), NM_058897(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069647 NCBI Caenorhabditis elegans Y43E12A.3 (Y43E12A.3) mRNA, complete cds. 11/11 A 
NM_058897 NCBI Caenorhabditis elegans H31G24.3 (H31G24.3) mRNA, complete cds. 11/11 None
GENEFINDER00000031643 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4116852:4117991:1 10/11 None
GENEFINDER00000002301 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10987878:10990848:1 10/11 None
H31G24.3 ENSEMBL cdna:known chromosome:CEL140:I:4116852:4118282:1 gene:H31G24.3 11/11 None
Y43E12A.3 ENSEMBL cdna:known chromosome:CEL140:IV:10987876:10989335:1 gene:Y43E12A.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031639 4/11 Cross Hyb Matching Probes None
SNAP00000002299 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4116851-4118282(+) 100.0 100.0
chrIV:10987883-10989329(+) 96.56 96.56
Public Domain and Genome References
Gene Title
BTB (also known as BR-C/Ttk) domain.
Ensembl H31G24.3
Y43E12A.3
Entrez Gene 177995 Entrez gene
186795 Entrez gene
SwissProt Q9BLB4 EMBL-EBI
O45927 EMBL-EBI
WormBase CE23834 Wormbase
CE16621 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA15976 Hypothetical protein Y43E12A.3 [Caenorhabditis elegans] ref|NP_502048.1| Y43E12A.3 [Caenorhabditis elegans] 0.0
blast CAA15976 Hypothetical protein Y43E12A.3 [Caenorhabditis elegans] ref|NP_502048.1| Y43E12A.3 [Caenorhabditis elegans] 1.0E-160
blast AAK21416 Hypothetical protein H31G24.3 [Caenorhabditis elegans] ref|NP_491298.1| H31G24.3 [Caenorhabditis elegans] 1.0E-136
blast AAK21416 Hypothetical protein H31G24.3 [Caenorhabditis elegans] ref|NP_491298.1| H31G24.3 [Caenorhabditis elegans] 1.0E-113
blast CAA15976 Hypothetical protein Y43E12A.3 [Caenorhabditis elegans] ref|NP_502048.1| Y43E12A.3 [Caenorhabditis elegans] 4.0E-82
blast CAE61969 Hypothetical protein CBG05970 [Caenorhabditis briggsae] 2.0E-67
blast CAE61969 Hypothetical protein CBG05970 [Caenorhabditis briggsae] 7.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 9.6E-18
Sequence
Target Sequence 
>C. ELEGANS:176811_S_AT
aattgcatgccgaatggagcgaagaacttgaaaccgaagtagtttcgatcaagcttcggc
accgaaggagaaatgttgatgatatctggagtatggatgcaacagtcaaaattcattttg
aacaagactggctgaaaggcgaggtacaagtagattcccaattttcgaatcaaggtcaag
aaattgagattctcaactgtggaacggttgtaattttgaatgcattttcaaattcatcta
cgttttgtgaaagtgttccagataaatcagtcaaaagacactatagttctggtggatggc
gtgaaattccatgtaaatcgaatgagagcgatttggttaagcaattcgaacacattcaac
ggattcttcgtattggaaaatcacttcaaatttcaatcgtgttggaagttgctgacaaat
ggctggttaaatacggacggcacaaattgggagacacacttcacttggtacaagcgttcg
ggctacggaagttgatgaaagttagaattgcaacatatgtagttcaaaatgttcagaaga
gacagctgacaagttcttgtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGCATGCCGAATGGAGCGAAGA 263 179 131 Antisense
TAGTTTCGATCAAGCTTCGGCACCG 300 653 170 Antisense
GGAGTATGGATGCAACAGTCAAAAT 129 515 218 Antisense
GACTGGCTGAAAGGCGAGGTACAAG 536 375 256 Antisense
GAGGTACAAGTAGATTCCCAATTTT 615 401 271 Antisense
TTCCCAATTTTCGAATCAAGGTCAA 330 697 285 Antisense
TTCGAACACATTCAACGGATTCTTC 600 687 475 Antisense
AAATCACTTCAAATTTCAATCGTGT 329 117 508 Antisense
TCAATCGTGTTGGAAGTTGCTGACA 239 633 523 Antisense
GTTGCTGACAAATGGCTGGTTAAAT 452 3 538 Antisense
AGAGACAGCTGACAAGTTCTTGTGT 529 69 668 Antisense
Sequence Source Affymetrix Proprietary Database