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[176809_at] 7TM chemoreceptor, srt family

Description R13D7.10 /REP_DB=WormBase Gene ID /WP=CE18155 /GB=AAK72298.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 34      6grp_cgc > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 4.6
(-3)
A 		39.9
(3)
A 		9
(-2.3)
A 		28.9
(1.1)
A 		35
B 3.4
(-3)
A 		50.1
(3)
A 		4.4
(-2.9)
A 		38.9
(1.6)
A 		47
C 6.9
(-3)
A 		65.5
(3)
A 		17.7
(-1.9)
A 		50.3
(1.4)
A 		59
avr 5
(-3) 		51.8
(3) 		10.4
(-2.3) 		39.4
(1.4) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 58.3
(1.6)
A 		42.7
(0.2)
A 		73.2
(3)
A 		7.1
(-3)
A 		22.2
(-1.6)
A 		35.5
(-0.4)
A 		66
B 24.6
(-1.2)
A 		7.2
(-2.6)
A 		7.1
(-2.6)
A 		51.9
(1)
A 		76.9
(3)
A 		2.3
(-3)
A 		75
C 7
(-2.9)
A 		58
(3)
A 		8.9
(-2.7)
A 		17.2
(-1.7)
A 		5.9
(-3)
A 		13.3
(-2.1)
A 		52
avr 30
(1.1) 		36
(3) 		29.7
(1) 		25.4
(-0.3) 		35
(2.7) 		17
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.7
(-3)
A 		8.7
(3)
A 		2.4
(-2.4)
A 		4.2
(-0.9)
A 		7
B 1.1
(-2.9)
A 		12.4
(3)
A 		1
(-3)
A 		8.3
(0.8)
A 		11
C 2.3
(-3)
A 		18.8
(3)
A 		6.2
(-1.6)
A 		8.5
(-0.7)
A 		17
avr 1.7
(-3) 		13.3
(3) 		3.2
(-2.2) 		7
(-0.3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 10.7
(0.8)
A 		15.2
(2.7)
A 		15.9
(3)
A 		1.8
(-3)
A 		6.7
(-0.9)
A 		8.6
(-0.1)
A 		14
B 8.6
(-1.5)
A 		2.4
(-2.7)
A 		1.7
(-2.8)
A 		13.7
(-0.5)
A 		31.2
(3)
A 		0.8
(-3)
A 		30
C 2.6
(-2.7)
A 		17.7
(3)
A 		2.3
(-2.8)
A 		3.5
(-2.4)
A 		1.9
(-3)
A 		4.5
(-2)
A 		16
avr 7.3
(-1.1) 		11.8
(2) 		6.6
(-1.6) 		6.3
(-1.8) 		13.3
(3) 		4.6
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176809_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11821
Sequence Type Exemplar sequence
Representative Public ID R13D7.10 NCBI
Target Description R13D7.10 /REP_DB=WormBase Gene ID /WP=CE18155 /GB=AAK72298.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072496(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072496 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-6) (srt-6) mRNA, complete cds. 11/11 None
GENEFINDER00000007959 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7410139:7411406:-1 11/11 None
R13D7.10 ENSEMBL cdna:known chromosome:CEL140:V:7410139:7411406:-1 gene:R13D7.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7410139-7411407(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-6
Ensembl R13D7.10
Entrez Gene 187860 Entrez gene
SwissProt Q966G5 EMBL-EBI
WormBase CE18155 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504897 Serpentine Receptor, class T family member (srt-6) [Caenorhabditis elegans] gb|AAK72298.1| Serpentine receptor, class t protein 6 [Caenorhabditis elegans] 0.0
blast NP_503842 Serpentine Receptor, class T family member (srt-7) [Caenorhabditis elegans] gb|AAG23992.1| Serpentine receptor, class t protein 7 [Caenorhabditis elegans] 1.0E-144
blast NP_503844 Serpentine Receptor, class T family member (srt-8) [Caenorhabditis elegans] gb|AAG24003.1| Serpentine receptor, class t protein 8 [Caenorhabditis elegans] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.1E-118
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504897.1 7 37-59,72-94,109-131,151-169,202-224,245-267,272-294
R13D7.10 7 37-59,72-94,109-131,151-169,202-224,245-267,272-294
GENEFINDER00000007959 7 37-59,72-94,109-131,151-169,202-224,245-267,272-294
Sequence
Target Sequence 
>C. ELEGANS:176809_AT
attgctattcacgaagcctgtccttttttccgtggagtatagctgctggttttttgatcc
aatgactggggaaaatccggatatttttgttagtcaccccgaaactgttagtaacattgt
tctagtgatttgtacgggtactctttatttatatctatcttacaatctacttttcaaact
aggttactctacttcgacatggctctacaagactaaacgtcagataatattccaagcagt
catcctctgtgtttttcatgcaacggttgctgggctctacagttttatgatgttttgcta
tgtctcttcacaactcatgcttataagtcaaattctatgggcttggagcagtggatgcat
gtgcattgcttacttaacattcaacagaacaatccggaattctgtgataaaaattctaat
tccaaaagcgatccgattacgtcatggtttgcacgttggatttgaagagcacttggcaca
aaccgaggcagcgaacaatgtgggaaaaggaatattaaacgccgcaggctcggcagtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCTATTCACGAAGCCTGTCCTT 485 5 510 Antisense
TGTTAGTCACCCCGAAACTGTTAGT 666 557 597 Antisense
GTACGGGTACTCTTTATTTATATCT 587 457 641 Antisense
TAGGTTACTCTACTTCGACATGGCT 405 653 689 Antisense
TATTCCAAGCAGTCATCCTCTGTGT 51 665 737 Antisense
TCCTCTGTGTTTTTCATGCAACGGT 417 593 752 Antisense
AACGGTTGCTGGGCTCTACAGTTTT 672 135 771 Antisense
GATGTTTTGCTATGTCTCTTCACAA 662 409 798 Antisense
GTCTCTTCACAACTCATGCTTATAA 45 471 811 Antisense
CACTTGGCACAAACCGAGGCAGCGA 334 197 979 Antisense
TAAACGCCGCAGGCTCGGCAGTCAA 374 641 1025 Antisense
Sequence Source Affymetrix Proprietary Database