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[176807_at]

Description C55B7.11 /REP_DB=WormBase Gene ID /WP=CE09022 /GB=AAK68271.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 5
(-3)
A 		12.9
(-2.7)
A 		60.5
(-0.6)
A 		141.1
(3)
A 		136
B 32.2
(-3)
A 		64.4
(2.2)
A 		52.4
(0.2)
A 		69.7
(3)
A 		38
C 5.9
(-3)
A 		95.7
(1.4)
A 		92.4
(1.2)
A 		128.3
(3)
A 		122
avr 14.4
(-3) 		57.7
(-0.4) 		68.4
(0.3) 		113
(3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 316
1 2 3 4 5 6 range
A 7.2
(-3)
A 		32.9
(-2.3)
A 		42.1
(-2.1)
A 		134.7
(0.4)
A 		142.3
(0.6)
A 		233.1
(3)
P 		226
B 45.1
(-2.2)
A 		5.5
(-3)
A 		80.5
(-1.6)
A 		113.3
(-1)
A 		232
(1.3)
P 		321.2
(3)
P 		316
C 9.4
(-3)
A 		9
(-3)
A 		66.1
(-1.6)
A 		60.8
(-1.7)
A 		170.8
(1)
P 		251.1
(3)
P 		242
avr 20.6
(-2.9) 		15.8
(-3) 		62.9
(-1.9) 		102.9
(-0.9) 		181.7
(0.9) 		268.5
(3) 		253
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 1.8
(-3)
A 		2.8
(-2.7)
A 		15.8
(1.4)
A 		20.7
(3)
A 		19
B 10.3
(-3)
A 		15.9
(3)
A 		12.1
(-1.1)
A 		14.8
(1.8)
A 		6
C 2
(-3)
A 		27.5
(2.1)
A 		32.2
(3)
A 		21.6
(0.9)
A 		30
avr 4.7
(-3) 		15.4
(1.2) 		20
(3) 		19
(2.6) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 1.3
(-3)
A 		11.7
(-1.9)
A 		9.2
(-2.1)
A 		34.2
(0.6)
A 		42.9
(1.5)
A 		56.8
(3)
P 		56
B 15.7
(-2.3)
A 		1.8
(-3)
A 		19.5
(-2.1)
A 		30
(-1.6)
A 		94.3
(1.7)
P 		119.8
(3)
P 		118
C 3.5
(-2.9)
A 		2.7
(-3)
A 		16.8
(-2)
A 		12.2
(-2.3)
A 		55.3
(0.9)
P 		84.1
(3)
P 		81
avr 6.8
(-2.9) 		5.4
(-3) 		15.2
(-2.3) 		25.5
(-1.5) 		64.2
(1.3) 		86.9
(3) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176807_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1088
Sequence Type Exemplar sequence
Representative Public ID C55B7.11 NCBI
Target Description C55B7.11 /REP_DB=WormBase Gene ID /WP=CE09022 /GB=AAK68271.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059474(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059474 NCBI Caenorhabditis elegans C55B7.11 (C55B7.11) mRNA, complete cds. 11/11 None
SNAP00000038304 ENSEMBL cdna:SNAP chromosome:CEL140:I:6519956:6521782:-1 10/11 None
GENEFINDER00000038307 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6519956:6521782:-1 10/11 None
C55B7.11 ENSEMBL cdna:known chromosome:CEL140:I:6520714:6521782:-1 gene:C55B7.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6520642-6521711(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C55B7.11
Entrez Gene 183846 Entrez gene
SwissProt Q966M0 EMBL-EBI
WormBase CE09022 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491875 C55B7.11 [Caenorhabditis elegans] gb|AAK68271.1| Hypothetical protein C55B7.11 [Caenorhabditis elegans] 1.0E-177
blast NP_491875 C55B7.11 [Caenorhabditis elegans] gb|AAK68271.1| Hypothetical protein C55B7.11 [Caenorhabditis elegans] 1.0E-170
blast CAE67081 Hypothetical protein CBG12492 [Caenorhabditis briggsae] 4.0E-41
blast CAA92463 Hypothetical protein F27C8.5 [Caenorhabditis elegans] ref|NP_501703.1| F27C8.5 [Caenorhabditis elegans] 4.0E-9
Sequence
Target Sequence 
>C. ELEGANS:176807_AT
gtatacgcgattcggacggcgattttcaactatgtcacacaaccagagcttaacactgaa
acgttgattgagatcttaccggacggaaaactcattctgaacccacgtgacgcttcaaag
tatgctgaaaaaccttgcgatgaacatattttcattctcaaacagcttcaaaaactggtt
tcatacaagaaattcacgtacttcacggctctgatacaatatgattttgctcgctgtaac
tctgaaactcgctgcagccagatttctagaccaatatcaaactacaagtcttctggattt
gatatggaaaatcaaagtttattctctgttggttttggaaagtattccttctcggatggt
gtttctcctgctgaggatttgatgactaacgagcataattcggcattggaaatgtatcaa
agtagtatgaaagcccttgaaaatttcaagtgcaatgaaaaattggttggaaaacaatgg
gtagtaacaacgattgaagaagatagtgatgatgaagtcgatgaggaagaacaatggaac
ctctcagctaccgaagcaacatccgattctggtcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATACGCGATTCGGACGGCGATTT 541 445 382 Antisense
ACGGCGATTTTCAACTATGTCACAC 339 97 397 Antisense
CGGAAAACTCATTCTGAACCCACGT 653 241 465 Antisense
GAACCCACGTGACGCTTCAAAGTAT 301 345 480 Antisense
ACGTACTTCACGGCTCTGATACAAT 218 93 577 Antisense
TGCTCGCTGTAACTCTGAAACTCGC 368 581 609 Antisense
GAAACTCGCTGCAGCCAGATTTCTA 494 357 625 Antisense
ATTCCTTCTCGGATGGTGTTTCTCC 360 7 725 Antisense
GGTGTTTCTCCTGCTGAGGATTTGA 67 501 739 Antisense
AGAACAATGGAACCTCTCAGCTACC 182 73 909 Antisense
GAAGCAACATCCGATTCTGGTCAGT 402 341 934 Antisense
Sequence Source Affymetrix Proprietary Database