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[176805_at]

Description H31G24.1 /REP_DB=WormBase Gene ID /WP=CE21002 /GB=AAK21415.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 44      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 42.7
(-3)
A 		59.1
(3)
M 		50.6
(-0.1)
A 		45.2
(-2.1)
A 		16
B 48.4
(1.2)
A 		54
(3)
A 		42.1
(-0.9)
A 		35.8
(-3)
A 		18
C 55.9
(3)
P 		47
(0.9)
A 		39.4
(-0.8)
A 		29.9
(-3)
A 		26
avr 49
(1.4) 		53.4
(3) 		44
(-0.4) 		37
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 91
(3)
P 		54.4
(0.4)
A 		26.6
(-1.5)
A 		5.7
(-3)
A 		31.3
(-1.2)
A 		26.8
(-1.5)
A 		85
B 24.8
(-3)
A 		29
(-1.3)
A 		33
(0.3)
A 		34.6
(1)
A 		39.5
(3)
A 		29.4
(-1.1)
A 		15
C 26.3
(-3)
P 		37.2
(-0.1)
M 		43.4
(1.5)
P 		49.1
(3)
P 		39
(0.3)
A 		28.5
(-2.4)
P 		23
avr 47.4
(3) 		40.2
(0.8) 		34.3
(-1.1) 		29.8
(-2.5) 		36.6
(-0.4) 		28.2
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 15.6
(3)
A 		12.8
(1.1)
M 		13.2
(1.4)
A 		6.6
(-3)
A 		9
B 15.4
(3)
A 		13.3
(1.4)
A 		9.8
(-1.3)
A 		7.6
(-3)
A 		8
C 18.5
(3)
P 		13.5
(0.8)
A 		13.7
(0.9)
A 		5
(-3)
A 		14
avr 16.5
(3) 		13.2
(1) 		12.2
(0.4) 		6.4
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 16.8
(2.2)
P 		19.3
(3)
A 		5.8
(-1.5)
A 		1.4
(-3)
A 		9.4
(-0.3)
A 		6.5
(-1.3)
A 		18
B 8.6
(-2.6)
A 		9.7
(-1.7)
A 		8
(-3)
A 		9.2
(-2.1)
A 		16.1
(3)
A 		11
(-0.8)
A 		8
C 9.8
(-2.4)
P 		11.3
(0.5)
M 		11.1
(0.1)
P 		9.9
(-2.2)
P 		12.6
(3)
A 		9.5
(-3)
P 		3
avr 11.7
(1.5) 		13.4
(3) 		8.3
(-1.6) 		6.8
(-3) 		12.7
(2.4) 		9
(-1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176805_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1235
Sequence Type Exemplar sequence
Representative Public ID H31G24.1 NCBI
Target Description H31G24.1 /REP_DB=WormBase Gene ID /WP=CE21002 /GB=AAK21415.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058898(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058898 NCBI Caenorhabditis elegans H31G24.1 (H31G24.1) mRNA, complete cds. 11/11 None
SNAP00000031642 ENSEMBL cdna:SNAP chromosome:CEL140:I:4123482:4124705:1 11/11 None
GENEFINDER00000031645 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4123482:4124705:1 11/11 None
H31G24.1 ENSEMBL cdna:known chromosome:CEL140:I:4123482:4124705:1 gene:H31G24.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4123481-4124705(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H31G24.1
Entrez Gene 186794 Entrez gene
SwissProt Q9BLB3 EMBL-EBI
WormBase CE21002 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21415 Hypothetical protein H31G24.1 [Caenorhabditis elegans] ref|NP_491299.1| H31G24.1 [Caenorhabditis elegans] 4.0E-18
Sequence
Target Sequence 
>C. ELEGANS:176805_AT
aatgtactctatttgtactgctttctgtcggatggtcatatgcatgtctttccggattga
cgggtggtggagggggtggtggatgttgcccaccaggaccatcttgtcagcaagcaaatc
actgtgcatccagctacgtgtctatacaagcttctggaccagttagctatgcgatcccac
ctccatcctacgctcagcctcctcagccatatgctcagtcaccgattgctgcagttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTACTCTATTTGTACTGCTTTC 157 165 26 Antisense
TACTGCTTTCTGTCGGATGGTCATA 168 647 41 Antisense
GATGGTCATATGCATGTCTTTCCGG 27 409 56 Antisense
GCATGTCTTTCCGGATTGACGGGTG 39 309 67 Antisense
TTGACGGGTGGTGGAGGGGGTGGTG 223 467 82 Antisense
CCACCAGGACCATCTTGTCAGCAAG 618 273 115 Antisense
GCAAGCAAATCACTGTGCATCCAGC 602 319 135 Antisense
TGCATCCAGCTACGTGTCTATACAA 360 579 150 Antisense
TCTATACAAGCTTCTGGACCAGTTA 8 615 166 Antisense
GGACCAGTTAGCTATGCGATCCCAC 325 523 181 Antisense
CTCAGTCACCGATTGCTGCAGTTCC 8 229 239 Antisense
Sequence Source Affymetrix Proprietary Database