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[176803_at]

Description C03B1.14 /REP_DB=WormBase Gene ID /WP=CE25752 /GB=AAK68682.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 51      4grp_total > 52      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 172
(2)
A 		191.4
(3)
A 		130.1
(-0.2)
A 		75.3
(-3)
A 		116
B 158.4
(1.3)
A 		201.8
(3)
A 		123.7
(-0.1)
A 		52.9
(-3)
A 		149
C 186
(2)
A 		209.1
(3)
A 		178.3
(1.6)
A 		75.7
(-3)
A 		133
avr 172.1
(1.7) 		200.8
(3) 		144
(0.4) 		68
(-3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 179.8
(0.5)
A 		165.8
(-0.1)
A 		243.3
(3)
P 		215.3
(1.9)
P 		154.5
(-0.5)
P 		92.4
(-3)
A 		151
B 172.7
(1.3)
M 		121.2
(-2.6)
M 		156.9
(0.1)
P 		158.4
(0.2)
P 		194.5
(3)
P 		116.3
(-3)
A 		78
C 161.8
(0.3)
A 		173.1
(0.8)
A 		220.9
(3)
P 		195.6
(1.9)
P 		136.2
(-0.8)
A 		88.5
(-3)
P 		132
avr 171.4
(1) 		153.4
(0) 		207
(3) 		189.8
(2) 		161.7
(0.5) 		99.1
(-3) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 62.6
(3)
A 		41.5
(0.5)
A 		34
(-0.3)
A 		11
(-3)
A 		52
B 50.5
(3)
A 		49.8
(2.9)
A 		28.7
(-0.3)
A 		11.3
(-3)
A 		39
C 61.6
(2.9)
A 		60.1
(2.8)
A 		62.1
(3)
A 		12.8
(-3)
A 		49
avr 58.2
(3) 		50.5
(2) 		41.6
(0.9) 		11.7
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 33.2
(-1.2)
A 		59
(3)
A 		53
(2)
P 		54.6
(2.3)
P 		46.6
(1)
P 		22.5
(-3)
A 		37
B 60.1
(0.2)
M 		40.4
(-2.7)
M 		38.1
(-3)
P 		42
(-2.4)
P 		79
(3)
P 		43.4
(-2.2)
A 		41
C 60
(3)
A 		52.8
(1.6)
A 		56.2
(2.3)
P 		39.3
(-1.1)
P 		44.1
(-0.1)
A 		29.6
(-3)
P 		30
avr 51.1
(1.7) 		50.7
(1.6) 		49.1
(1.2) 		45.3
(0.3) 		56.6
(3) 		31.8
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176803_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17043
Sequence Type Exemplar sequence
Representative Public ID C03B1.14 NCBI
Target Description C03B1.14 /REP_DB=WormBase Gene ID /WP=CE25752 /GB=AAK68682.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076666(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076666 NCBI Caenorhabditis elegans C03B1.14 (C03B1.14) mRNA, complete cds. 11/11 None
GENEFINDER00000009798 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6358555:6360714:-1 11/11 None
SNAP00000009785 ENSEMBL cdna:SNAP chromosome:CEL140:X:6359420:6360714:-1 11/11 None
C03B1.14 ENSEMBL cdna:known chromosome:CEL140:X:6359420:6360702:-1 gene:C03B1.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6359419-6360702(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03B1.14
Entrez Gene 182152 Entrez gene
SwissProt Q95QY5 EMBL-EBI
WormBase CE25752 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68682 Hypothetical protein C03B1.14 [Caenorhabditis elegans] ref|NP_509067.1| C03B1.14 [Caenorhabditis elegans] 1.0E-141
blast AAK68682 Hypothetical protein C03B1.14 [Caenorhabditis elegans] ref|NP_509067.1| C03B1.14 [Caenorhabditis elegans] 1.0E-135
blast AAB37563 Hypothetical protein C13G5.2 [Caenorhabditis elegans] ref|NP_498897.1| C13G5.2 [Caenorhabditis elegans] sp|P34327|YKX2_CAEEL Hypothetical protein C13G5.2 in chromosome III 1.0E-66
blast AAB37563 Hypothetical protein C13G5.2 [Caenorhabditis elegans] ref|NP_498897.1| C13G5.2 [Caenorhabditis elegans] sp|P34327|YKX2_CAEEL Hypothetical protein C13G5.2 in chromosome III 1.0E-65
blast CAE69278 Hypothetical protein CBG15332 [Caenorhabditis briggsae] 2.0E-39
Sequence
Target Sequence 
>C. ELEGANS:176803_AT
gtgggttcgatttgatcgtcctcatggaaacgtgaatttcaatcatataaacatcaataa
agctataacaggagtgactgatccacacataaaaataaacccgataactgcacaaatttt
tggaatacttgggaaggttgctgaaaaaaccaatcaaattgctcctgctttcgcagctgc
tacattacttttcgaagcttatcaaatttccaaagaagtaaagaaagatattgatcataa
cacaacacggaatacggtcgaagttctggcaacgaaagtaggagaatactctgctggatc
agcttcggcatatgctggtagtgcgattggtaccgctgttcttcccggcattgggacagt
tttcggtgctattgtggctggagtttttgtaacaccttttgttgcacaacttggtgatgt
cacagttgagtatattctgtccaaaatgaaatgggatgtcgtgacgatggtttgtaatga
gtgtggaaaaggatatgactggaacgtgtatcaggatgtcgaaggagtgtgcagttgcgt
cgaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGGTTCGATTTGATCGTCCTCAT 611 481 207 Antisense
TCAAATTGCTCCTGCTTTCGCAGCT 227 629 360 Antisense
CGCAGCTGCTACATTACTTTTCGAA 403 253 378 Antisense
GAATACGGTCGAAGTTCTGGCAACG 214 323 456 Antisense
TACTCTGCTGGATCAGCTTCGGCAT 18 645 493 Antisense
GCTTCGGCATATGCTGGTAGTGCGA 41 307 508 Antisense
TAGTGCGATTGGTACCGCTGTTCTT 125 655 525 Antisense
CTGTTCTTCCCGGCATTGGGACAGT 281 239 542 Antisense
GACAGTTTTCGGTGCTATTGTGGCT 230 349 561 Antisense
GTAACACCTTTTGTTGCACAACTTG 544 461 595 Antisense
AAGGAGTGTGCAGTTGCGTCGAGGC 410 159 728 Antisense
Sequence Source Affymetrix Proprietary Database