[Home] | [Total List]

[176802_s_at]

Description F47D12.9 /REP_DB=WormBase Gene ID /WP=CE24988 /GB=AAK20070.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 86      4grp_highest_8_8 > 52      4grp_high_8_8 > 24      6grp_highest_nonorm > 97      6grp_total > 76      4grp_total > 39      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 858
1 2 3 4 range
A 1406.6
(3)
P 		583.6
(-3)
P 		718.7
(-2)
P 		894.3
(-0.7)
P 		823
B 1266.1
(3)
P 		896
(-1.9)
P 		810.8
(-3)
P 		948.4
(-1.2)
P 		455
C 1441.1
(3)
P 		974.2
(-1.4)
P 		799
(-3)
P 		1042.8
(-0.7)
P 		642
avr 1371.3
(3) 		817.9
(-2.6) 		776.2
(-3) 		961.8
(-1.1) 		595

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 972
1 2 3 4 5 6 range
A 721.8
(-3)
P 		905.3
(-1.2)
P 		988.5
(-0.3)
P 		1019.4
(-0)
P 		999.9
(-0.2)
P 		1322.8
(3)
P 		601
B 860.7
(-3)
P 		914.3
(-2.6)
P 		996.3
(-2)
P 		1123.1
(-1)
P 		1044.5
(-1.6)
P 		1659.7
(3)
P 		799
C 771.1
(-3)
P 		931
(-2)
P 		1106.9
(-0.8)
P 		1089.6
(-0.9)
P 		1072.7
(-1)
P 		1694
(3)
P 		923
avr 784.5
(-3) 		916.9
(-2) 		1030.6
(-1.1) 		1077.4
(-0.7) 		1039
(-1) 		1558.8
(3) 		774
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 385
1 2 3 4 range
A 512.1
(3)
P 		126.7
(-3)
P 		187.9
(-2)
P 		130.9
(-2.9)
P 		385
B 403.7
(3)
P 		221.3
(-2.1)
P 		187.9
(-3)
P 		202.1
(-2.6)
P 		216
C 477.1
(3)
P 		280.1
(-0.9)
P 		278.5
(-1)
P 		175.8
(-3)
P 		301
avr 464.3
(3) 		209.4
(-2.2) 		218.1
(-2) 		169.6
(-3) 		295

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 486
1 2 3 4 5 6 range
A 133
(-3)
P 		322
(3)
P 		215.3
(-0.4)
P 		258.5
(1)
P 		301.7
(2.4)
P 		322.1
(3)
P 		189
B 299.5
(-2.1)
P 		304.3
(-2)
P 		241.9
(-3)
P 		297.5
(-2.1)
P 		424.4
(-0.1)
P 		618.9
(3)
P 		377
C 285.8
(-1.9)
P 		284.1
(-1.9)
P 		281.7
(-1.9)
P 		219.1
(-3)
P 		347.1
(-0.8)
P 		567.1
(3)
P 		348
avr 239.4
(-3) 		303.5
(-1.5) 		246.3
(-2.8) 		258.4
(-2.6) 		357.7
(-0.3) 		502.7
(3) 		263
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176802_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6025
Sequence Type Exemplar sequence
Representative Public ID F47D12.9 NCBI
Target Description F47D12.9 /REP_DB=WormBase Gene ID /WP=CE24988 /GB=AAK20070.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_181945(11), NM_065981(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_181945 NCBI Caenorhabditis elegans F47D12.9b (F47D12.9) mRNA, complete cds. 11/11 None
NM_065981 NCBI Caenorhabditis elegans F47D12.9a (F47D12.9) mRNA, complete cds. 11/11 None
SNAP00000002706 ENSEMBL cdna:SNAP chromosome:CEL140:III:6299737:6302437:-1 11/11 None
GENEFINDER00000002716 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6299737:6302437:-1 11/11 None
F47D12.9b.2 ENSEMBL cdna:known chromosome:CEL140:III:6299282:6301491:-1 gene:F47D12.9 11/11 A 
F47D12.9b.1 ENSEMBL cdna:known chromosome:CEL140:III:6299282:6302448:-1 gene:F47D12.9 11/11 A 
F47D12.9b.3 ENSEMBL cdna:known chromosome:CEL140:III:6299524:6302448:-1 gene:F47D12.9 11/11 A 
F47D12.9a ENSEMBL cdna:known chromosome:CEL140:III:6299737:6303158:-1 gene:F47D12.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6299735-6303147(-) 100.0 100.0
Public Domain and Genome References
Ensembl F47D12.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN63388 Hypothetical protein F47D12.9b [Caenorhabditis elegans] ref|NP_871674.1| F47D12.9b [Caenorhabditis elegans] 0.0
blast AAK20070 Hypothetical protein F47D12.9a [Caenorhabditis elegans] ref|NP_498382.2| F47D12.9a [Caenorhabditis elegans] sp|Q09392|YR49_CAEEL Hypothetical WD-repeat protein F47D12.9 in chromosome III 0.0
blast CAE70717 Hypothetical protein CBG17459 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.23
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.011
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.23
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.011
Sequence
Target Sequence 
>C. ELEGANS:176802_S_AT
attcggactcgaatcgtgcttccgtgtggagaatcttctcacagatcgaagcttcttgat
gtctagtcgaaagagaaatgtattgaatcattgtttttcggcagatggaaatcttgtata
tatgggtcttcgtaatgataatgtcatcaaatccgatcttcgaatgaatcgggatcatat
cacaggacaattgaacggtgcatgtaacacaacatttgtccgagttctcgaaaagacgcg
accagaatgtgttgtaactgaaggatttgattcgatcattcgcatttgggatttccgatg
gccgaagaatccgatgatggagatgcatggacatagtaacaactgcaatcgtctcaatgt
tttctttgacaaggaggaaagatttgtgtttgcagctggatcagatggatatgttcgtgg
atggtctctaacatctggtgacatgctttgttcagtaaaaactccaaatcattccaatcc
aatcttcccaagagccgtctactcggattgttggggtggtcgaccagggaattcagcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCGGACTCGAATCGTGCTTCCGT 490 7 1158 Antisense
GTGCTTCCGTGTGGAGAATCTTCTC 561 479 1173 Antisense
GATCGAAGCTTCTTGATGTCTAGTC 481 417 1201 Antisense
AATGTCATCAAATCCGATCTTCGAA 8 165 1297 Antisense
ACACAACATTTGTCCGAGTTCTCGA 575 109 1364 Antisense
CGCATTTGGGATTTCCGATGGCCGA 693 251 1438 Antisense
TAGTAACAACTGCAATCGTCTCAAT 107 653 1491 Antisense
GGATATGTTCGTGGATGGTCTCTAA 289 511 1564 Antisense
CAAATCATTCCAATCCAATCTTCCC 552 193 1622 Antisense
TTCCCAAGAGCCGTCTACTCGGATT 309 695 1642 Antisense
GGTGGTCGACCAGGGAATTCAGCTA 505 499 1672 Antisense
Sequence Source Affymetrix Proprietary Database