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[176801_s_at]

Description Y51H7C.9 /REP_DB=WormBase Gene ID /WP=CE26153 /GB=AAK39340.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.6
(3)
A 		2.6
(-3)
A 		5.3
(2.4)
A 		4
(-0.2)
A 		3
B 2.3
(-3)
A 		2.8
(-2.7)
A 		11.8
(3)
A 		3.6
(-2.2)
A 		10
C 2.1
(-1.1)
A 		3.5
(2.3)
A 		1.3
(-3)
A 		3.8
(3)
A 		3
avr 3.3
(-2.4) 		3
(-3) 		6.1
(3) 		3.8
(-1.5) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 2.5
(-2.3)
A 		2
(-2.8)
A 		1.9
(-2.9)
A 		1.8
(-3)
A 		3
(-1.8)
A 		7.6
(3)
A 		6
B 1.4
(-3)
A 		3.4
(-2.4)
A 		2.2
(-2.7)
A 		1.6
(-2.9)
A 		20.1
(3)
A 		18.6
(2.5)
A 		19
C 2.2
(-3)
A 		2.1
(-3)
A 		2.6
(-2.9)
A 		13.6
(-0.7)
A 		32.7
(3)
A 		8.5
(-1.7)
A 		31
avr 2
(-3) 		2.5
(-2.8) 		2.2
(-2.9) 		5.7
(-1.7) 		18.6
(3) 		11.6
(0.5) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2
(3)
A 		0.6
(-3)
A 		1.4
(0.4)
A 		0.6
(-3)
A 		1
B 0.7
(-3)
A 		0.7
(-3)
A 		2.7
(3)
A 		0.8
(-2.7)
A 		2
C 0.7
(-0.6)
A 		1
(3)
A 		0.5
(-3)
A 		0.6
(-1.8)
A 		1
avr 1.1
(0) 		0.8
(-2.3) 		1.5
(3) 		0.7
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.5
(-2.6)
A 		0.7
(-1.8)
A 		0.4
(-3)
A 		0.5
(-2.6)
A 		0.9
(-1)
A 		1.9
(3)
A 		2
B 0.5
(-2.9)
A 		1.1
(-2.5)
A 		0.5
(-2.9)
A 		0.4
(-3)
A 		8.2
(3)
A 		6.9
(2)
A 		8
C 0.8
(-2.9)
A 		0.6
(-3)
A 		0.7
(-2.9)
A 		2.7
(-1.7)
A 		10.6
(3)
A 		2.8
(-1.7)
A 		10
avr 0.6
(-2.9) 		0.8
(-2.7) 		0.5
(-3) 		1.2
(-2.3) 		6.6
(3) 		3.9
(0.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176801_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5210
Sequence Type Exemplar sequence
Representative Public ID Y51H7C.9 NCBI
Target Description Y51H7C.9 /REP_DB=WormBase Gene ID /WP=CE26153 /GB=AAK39340.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061567(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061567 NCBI Caenorhabditis elegans Y51H7C.9 (Y51H7C.9) mRNA, complete cds. 11/11 None
SNAP00000035522 ENSEMBL cdna:SNAP chromosome:CEL140:II:1401804:1410856:-1 11/11 None
GENEFINDER00000035547 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1409158:1411202:-1 11/11 None
Y51H7C.9 ENSEMBL cdna:known chromosome:CEL140:II:1409190:1411462:-1 gene:Y51H7C.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1409188-1411461(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H7C.9
Entrez Gene 173519 Entrez gene
SwissProt Q95XY8 EMBL-EBI
WormBase CE26153 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6520 amino acid metabolism inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16597 amino acid binding inferred from electronic annotation QuickGO AmiGO
16829 lyase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39340 Hypothetical protein Y51H7C.9 [Caenorhabditis elegans] ref|NP_493968.1| Y51H7C.9 [Caenorhabditis elegans] 0.0
blast AAK39340 Hypothetical protein Y51H7C.9 [Caenorhabditis elegans] ref|NP_493968.1| Y51H7C.9 [Caenorhabditis elegans] 1.0E-174
blast AAK39340 Hypothetical protein Y51H7C.9 [Caenorhabditis elegans] ref|NP_493968.1| Y51H7C.9 [Caenorhabditis elegans] 1.0E-144
blast CAE57672 Hypothetical protein CBG00666 [Caenorhabditis briggsae] 1.0E-105
blast CAA88854 Hypothetical protein K01C8.1 [Caenorhabditis elegans] ref|NP_495741.2| K01C8.1 [Caenorhabditis elegans] 1.0E-105
blast CAE57672 Hypothetical protein CBG00666 [Caenorhabditis briggsae] 1.0E-88
blast CAA88854 Hypothetical protein K01C8.1 [Caenorhabditis elegans] ref|NP_495741.2| K01C8.1 [Caenorhabditis elegans] 2.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR002912 EMBL-EBI Amino acid-binding ACT 1.3E-4
Pfam IPR001926 EMBL-EBI Pyridoxal-5-phosphate-dependent enzyme, beta subunit 2.6E-65
Pfam IPR002912 EMBL-EBI Amino acid-binding ACT 2.4E-5
Pfam IPR001926 EMBL-EBI Pyridoxal-5-phosphate-dependent enzyme, beta subunit 3.3E-40
Pfam IPR002912 EMBL-EBI Amino acid-binding ACT 1.4E-4
Pfam IPR001926 EMBL-EBI Pyridoxal-5-phosphate-dependent enzyme, beta subunit 3.5E-58
Sequence
Target Sequence 
>C. ELEGANS:176801_S_AT
caagcaggacaccctgtgtacacgccgactcgtccaacactagctgacggattagcagta
cccaatgcaggagtgaatgcttttgcgtcgatgatcggaaaagtggatcgagtgattagt
gtgcctgaaaacgacatcgctgtggcaattctccgcctaatcgagaatgagaaggtggtc
tgcgaaggcgccggagcaatcggaatcggagcaattctatcgggaaagctgaatcatttg
aagggaaaaacagtcgtatcaattctctctggtggaaatatcgatagtacatcgctgggt
agatgcattgagagaggtctcgcgtatgatcatcgtgtaattcgtctgtcggttatcatt
cctgataagcctggtggtctgtcgaaattgactggcctggtgggcgaactgagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGCAGGACACCCTGTGTACACGC 651 185 763 Antisense
GACTCGTCCAACACTAGCTGACGGA 60 365 789 Antisense
GAATGCTTTTGCGTCGATGATCGGA 270 331 837 Antisense
AAACGACATCGCTGTGGCAATTCTC 317 127 891 Antisense
TCTGCGAAGGCGCCGGAGCAATCGG 412 607 941 Antisense
ACAGTCGTATCAATTCTCTCTGGTG 653 105 1012 Antisense
GAGAGGTCTCGCGTATGATCATCGT 37 397 1074 Antisense
GATCATCGTGTAATTCGTCTGTCGG 51 421 1090 Antisense
TCGTCTGTCGGTTATCATTCCTGAT 461 605 1104 Antisense
GATAAGCCTGGTGGTCTGTCGAAAT 638 421 1126 Antisense
GACTGGCCTGGTGGGCGAACTGAGT 368 375 1152 Antisense
Sequence Source Affymetrix Proprietary Database