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[176800_s_at]

Description Y59C2A.3 /REP_DB=WormBase Gene ID /WP=CE20331 /GB=AAC68741.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 06      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 93.9
(2.9)
A 		9.9
(-3)
A 		15.5
(-2.6)
A 		94.8
(3)
A 		85
B 116.7
(1)
M 		16.1
(-2.7)
A 		7.3
(-3)
A 		171.5
(3)
P 		164
C 69.9
(0)
A 		8
(-3)
A 		68.6
(-0)
A 		130.1
(3)
A 		122
avr 93.5
(1.1) 		11.3
(-3) 		30.5
(-2) 		132.1
(3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 95.6
(-1.5)
A 		191.8
(3)
P 		139.3
(0.6)
A 		75.8
(-2.4)
A 		62.5
(-3)
A 		100
(-1.3)
A 		129
B 127.5
(2.4)
M 		132.7
(3)
P 		129
(2.6)
A 		78.6
(-3)
A 		78.7
(-3)
A 		85.5
(-2.2)
P 		54
C 167.8
(3)
P 		133.8
(1.7)
M 		108.2
(0.7)
A 		11.5
(-3)
A 		100.4
(0.4)
A 		79
(-0.4)
A 		156
avr 130.3
(1.6) 		152.8
(3) 		125.5
(1.3) 		55.3
(-3) 		80.5
(-1.4) 		88.2
(-1) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 34.2
(3)
A 		2.1
(-3)
A 		4.1
(-2.6)
A 		13.9
(-0.8)
A 		32
B 37.2
(3)
M 		4
(-2.6)
A 		1.7
(-3)
A 		36.5
(2.9)
P 		36
C 23.1
(2.8)
A 		2.3
(-3)
A 		23.9
(3)
A 		21.9
(2.4)
A 		22
avr 31.5
(3) 		2.8
(-3) 		9.9
(-1.5) 		24.1
(1.5) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 17.6
(-3)
A 		68.2
(3)
P 		30.3
(-1.5)
A 		19.2
(-2.8)
A 		18.9
(-2.8)
A 		24.4
(-2.2)
A 		51
B 44.4
(3)
M 		44.2
(2.9)
P 		31.3
(-0.3)
A 		20.8
(-3)
A 		32
(-0.2)
A 		31.9
(-0.2)
P 		24
C 62.2
(3)
P 		40.8
(0.9)
M 		27.5
(-0.5)
A 		2.3
(-3)
A 		32.5
(0)
A 		26.4
(-0.6)
A 		60
avr 41.4
(1.4) 		51.1
(3) 		29.7
(-0.5) 		14.1
(-3) 		27.8
(-0.8) 		27.6
(-0.8) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176800_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5420
Sequence Type Exemplar sequence
Representative Public ID Y59C2A.3 NCBI
Target Description Y59C2A.3 /REP_DB=WormBase Gene ID /WP=CE20331 /GB=AAC68741.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061813(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061813 NCBI Caenorhabditis elegans Y59C2A.3 (Y59C2A.3) mRNA, complete cds. 11/11 None
SNAP00000003202 ENSEMBL cdna:SNAP chromosome:CEL140:II:2213392:2218191:-1 11/11 None
GENEFINDER00000003205 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2215524:2217633:-1 11/11 None
Y59C2A.3 ENSEMBL cdna:known chromosome:CEL140:II:2215477:2219922:-1 gene:Y59C2A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2215522-2219160(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y59C2A.3
Entrez Gene 173578 Entrez gene
WormBase CE37171 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494214 Y59C2A.3 [Caenorhabditis elegans] 0.0
blast ABA00149 Hypothetical protein Y59C2A.3 [Caenorhabditis elegans] 0.0
blast T33573 hypothetical protein Y59C2A.3 - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:176800_S_AT
gagcatgcttcgacaccaatgttcgaagacaccccacaagaggaagagttcgactacgac
gacgagtatgctccagaggaagaggaagtcgacgccgcttctgcgagtcctgaagatctt
ctcaacaccatcttcccctcggatgcccagcatggccaggatgatagaagaatcgtgaca
gttaaggagagacgggcggctgcggcgagggatcggtatcataagatgtcggaagaggag
aagcgccttcacaatcagcgtcgtcgctataaaaagtatggatttgatccgaagtcccgg
gagattaacctggaagatgtgcgggagcagatgaaggatgcgaacgcgaagaaggcggag
gcggcgagggttaggtaccatcaaatgtcggatgaggaaagattggctcacaatcagaaa
cgagcggagacacttcggaagcggcgggaagaagatgagaagcttctcacggcgaatgat
gctgcggtgagattggctaaagctcaacagattgctatacagaatgcacggaaggccgag
gcggcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCATGCTTCGACACCAATGTTCG 328 389 1537 Antisense
GACTACGACGACGAGTATGCTCCAG 424 373 1588 Antisense
CCGCTTCTGCGAGTCCTGAAGATCT 326 263 1631 Antisense
GAAGATCTTCTCAACACCATCTTCC 77 339 1648 Antisense
GATGCCCAGCATGGCCAGGATGATA 212 415 1678 Antisense
TTAAGGAGAGACGGGCGGCTGCGGC 641 683 1718 Antisense
AGGAGAAGCGCCTTCACAATCAGCG 337 55 1772 Antisense
GAGGCGGCGAGGGTTAGGTACCATC 244 405 1894 Antisense
CGAGCGGAGACACTTCGGAAGCGGC 622 249 1957 Antisense
GCTTCTCACGGCGAATGATGCTGCG 702 305 1998 Antisense
AATGCACGGAAGGCCGAGGCGGCAC 134 163 2059 Antisense
Sequence Source Affymetrix Proprietary Database