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[176797_at]

Description C03B1.13 /REP_DB=WormBase Gene ID /WP=CE25751 /GB=AAK68681.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 77      4grp_high_8_8 > 07      6grp_total > 76      4grp_total > 01      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 275
1 2 3 4 range
A 103.4
(-2.3)
P 		72.8
(-3)
P 		160.3
(-1)
P 		337.1
(3)
P 		264
B 102.9
(-2.6)
P 		88.6
(-3)
A 		91.4
(-2.9)
P 		312.4
(3)
P 		224
C 108.2
(-3)
P 		131.7
(-2.4)
A 		166.4
(-1.5)
P 		347.5
(3)
P 		239
avr 104.8
(-2.8) 		97.7
(-3) 		139.4
(-1.9) 		332.3
(3) 		235

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 60.9
(-3)
A 		97.3
(-1.8)
P 		122.6
(-1)
P 		164.3
(0.4)
P 		101.4
(-1.7)
P 		245.3
(3)
P 		184
B 108.4
(-2.6)
P 		96.9
(-3)
P 		109.3
(-2.5)
P 		119
(-2.2)
P 		145.4
(-1.2)
P 		260.3
(3)
P 		163
C 115.2
(-2.6)
P 		109.8
(-2.9)
P 		114.1
(-2.6)
P 		138.1
(-1.4)
P 		107.2
(-3)
P 		225.2
(3)
P 		118
avr 94.8
(-3) 		101.3
(-2.7) 		115.3
(-2.2) 		140.5
(-1.2) 		118
(-2.1) 		243.6
(3) 		149
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 37.7
(0.9)
P 		15.8
(-3)
P 		41.9
(1.7)
P 		49.3
(3)
P 		34
B 32.8
(-1.5)
P 		21.9
(-2.9)
A 		21.2
(-3)
P 		66.6
(3)
P 		45
C 35.8
(-3)
P 		37.9
(-2.4)
A 		58
(2.8)
P 		58.6
(3)
P 		23
avr 35.4
(-1.1) 		25.2
(-3) 		40.4
(-0.2) 		58.2
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 11.2
(-3)
A 		34.6
(-0.1)
P 		26.7
(-1.1)
P 		41.7
(0.8)
P 		30.6
(-0.6)
P 		59.7
(3)
P 		49
B 37.7
(-2)
P 		32.2
(-2.5)
P 		26.5
(-3)
P 		31.5
(-2.6)
P 		59.1
(-0.2)
P 		97.1
(3)
P 		71
C 42.7
(-1.1)
P 		33.5
(-2.3)
P 		29
(-2.8)
P 		27.8
(-3)
P 		34.7
(-2.1)
P 		75.4
(3)
P 		48
avr 30.5
(-2.6) 		33.4
(-2.3) 		27.4
(-3) 		33.7
(-2.2) 		41.5
(-1.3) 		77.4
(3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176797_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16478
Sequence Type Exemplar sequence
Representative Public ID C03B1.13 NCBI
Target Description C03B1.13 /REP_DB=WormBase Gene ID /WP=CE25751 /GB=AAK68681.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076660(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076660 NCBI Caenorhabditis elegans C03B1.13 (C03B1.13) mRNA, complete cds. 11/11 A 
GENEFINDER00000009792 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6335659:6337991:-1 11/11 None
SNAP00000009779 ENSEMBL cdna:SNAP chromosome:CEL140:X:6335671:6337991:-1 11/11 None
C03B1.13 ENSEMBL cdna:known chromosome:CEL140:X:6335298:6337711:-1 gene:C03B1.13 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6335658-6337711(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03B1.13
Entrez Gene 180910 Entrez gene
WormBase CE38995 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509061 C03B1.13 [Caenorhabditis elegans] 0.0
blast AAK68681 Hypothetical protein C03B1.13 [Caenorhabditis elegans] 0.0
blast CAE61242 Hypothetical protein CBG05042 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 9.1E-18
Pfam IPR005828 EMBL-EBI General substrate transporter 9.2E-8
Pfam IPR005828 EMBL-EBI General substrate transporter 1.0E-13
Pfam IPR005828 EMBL-EBI General substrate transporter 1.8E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509061.1 8 25-47,59-81,91-113,248-270,280-297,304-326,336-358,365-387
C03B1.13 8 25-47,59-81,91-113,248-270,280-297,304-326,336-358,365-387
GENEFINDER00000009792 9 7-29,70-92,105-127,193-215,350-372,382-399,406-428,438-460,467-489
SNAP00000009779 9 7-29,70-92,105-127,193-215,323-345,355-372,379-401,411-433,440-462
Sequence
Target Sequence 
>C. ELEGANS:176797_AT
gataggtgctattgttgcagcgtcatatgcttttaccggtgatgatttaattgacacatt
ctcatctaatatgctgataggcgaagagaaaagttcgaaaaagattcatcagacaacaga
tacgtttactattttagtctcggatgggctgggattagttcttttctttgcctcgttgtt
tggaatatatttggctgaccgatttggaagacggaagttggtacttgttggtttatttgg
aacatgtgttgctaacattggagcagtggttttcacaaccaacaaagtgatcgtatctct
ttgtttcgcggcaacaaaaacatttatcggcatcggctgcggtgggccagcgtggttttt
gacatcagaacttgtcgatccggaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAGGTGCTATTGTTGCAGCGTCA 616 425 630 Antisense
GCAGCGTCATATGCTTTTACCGGTG 544 307 646 Antisense
GACACATTCTCATCTAATATGCTGA 392 367 682 Antisense
ATTTTAGTCTCGGATGGGCTGGGAT 318 15 760 Antisense
GGCTGGGATTAGTTCTTTTCTTTGC 356 537 776 Antisense
TTTTCTTTGCCTCGTTGTTTGGAAT 222 675 791 Antisense
GGAGCAGTGGTTTTCACAACCAACA 509 519 889 Antisense
AGTGATCGTATCTCTTTGTTTCGCG 26 61 915 Antisense
AAAACATTTATCGGCATCGGCTGCG 630 129 946 Antisense
GTGGGCCAGCGTGGTTTTTGACATC 571 487 971 Antisense
ACATCAGAACTTGTCGATCCGGAAT 646 105 991 Antisense
Sequence Source Affymetrix Proprietary Database