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[176796_at]

Description C17G10.3 /REP_DB=WormBase Gene ID /WP=CE19359 /GB=AAK68186.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 22      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 5.8
(-1.2)
A 		11.2
(3)
A 		3.5
(-3)
A 		6.8
(-0.4)
A 		8
B 3.1
(-3)
A 		9.3
(-1.9)
A 		5.5
(-2.6)
A 		36.3
(3)
A 		33
C 42.9
(3)
A 		3.6
(-3)
A 		5.5
(-2.7)
A 		15
(-1.3)
A 		39
avr 17.3
(2.1) 		8
(-1.7) 		4.8
(-3) 		19.4
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 2.1
(-3)
A 		2.9
(-2.9)
A 		4.9
(-2.8)
A 		3.4
(-2.9)
A 		13.6
(-2)
A 		69.7
(3)
A 		68
B 12.4
(-2.4)
A 		5.6
(-3)
A 		6.8
(-2.9)
A 		12.7
(-2.4)
A 		38.1
(-0.2)
A 		75.7
(3)
P 		70
C 2.8
(-3)
A 		33.1
(0.3)
A 		13.2
(-1.9)
A 		12.2
(-2)
A 		17.1
(-1.5)
A 		58.2
(3)
A 		55
avr 5.8
(-3) 		13.9
(-2.2) 		8.3
(-2.8) 		9.4
(-2.7) 		22.9
(-1.3) 		67.9
(3) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.1
(1.8)
A 		2.4
(3)
A 		0.9
(-3)
A 		1
(-2.6)
A 		2
B 1
(-3)
A 		2.3
(-1.8)
A 		1.3
(-2.7)
A 		7.7
(3)
A 		7
C 14.2
(3)
A 		1
(-3)
A 		1.9
(-2.6)
A 		2.5
(-2.3)
A 		13
avr 5.8
(3) 		1.9
(-2.3) 		1.4
(-3) 		3.7
(0.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1
(-2.8)
A 		1.1
(-2.7)
A 		0.9
(-2.8)
A 		4.1
(-1.7)
A 		17
(3)
A 		17
B 4.3
(-2.4)
A 		1.9
(-3)
A 		1.7
(-3)
A 		3.4
(-2.6)
A 		15.5
(0.1)
A 		28.2
(3)
P 		27
C 1
(-3)
A 		10.1
(-0)
A 		3.4
(-2.2)
A 		2.5
(-2.5)
A 		5.5
(-1.5)
A 		19.5
(3)
A 		19
avr 1.9
(-3) 		4.3
(-2.3) 		2.1
(-2.9) 		2.3
(-2.9) 		8.4
(-1) 		21.6
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176796_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5459
Sequence Type Exemplar sequence
Representative Public ID C17G10.3 NCBI
Target Description C17G10.3 /REP_DB=WormBase Gene ID /WP=CE19359 /GB=AAK68186.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062681(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062681 NCBI Caenorhabditis elegans C17G10.3 (C17G10.3) mRNA, complete cds. 11/11 None
C17G10.3 ENSEMBL cdna:known chromosome:CEL140:II:5583082:5585442:1 gene:C17G10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069494 1/11 Cross Hyb Matching Probes None
SNAP00000029018 7/11 Cross Hyb Matching Probes None
GENEFINDER00000029035 7/11 Cross Hyb Matching Probes None
SNAP00000005977 2/11 Cross Hyb Matching Probes None
R09E10.1 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5583079-5585440(+) 100.0 100.0
chrIV:10319384-10321054(-) 84.07 84.07
Public Domain and Genome References
Gene Title
Ensembl C17G10.3
Entrez Gene 182742 Entrez gene
SwissProt Q95QW1 EMBL-EBI
WormBase CE19359 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68186 Hypothetical protein C17G10.3 [Caenorhabditis elegans] ref|NP_495082.1| C17G10.3 [Caenorhabditis elegans] 0.0
blast CAA94302 Hypothetical protein R09E10.1 [Caenorhabditis elegans] ref|NP_501895.2| R09E10.1 [Caenorhabditis elegans] 1.0E-126
blast CAE59143 Hypothetical protein CBG02447 [Caenorhabditis briggsae] 4.0E-89
Sequence
Target Sequence 
>C. ELEGANS:176796_AT
cggtcgttctggcatcagctgaaagaaacttgcagactcgagggcccaagcatctcaaaa
gagtcaaaaagtttctttacggtcaatatccaaaggtttgttatcaggaatcaatattca
aagctctatatgtggatatgaagagagatctgctgaaggttgtcaaacaacagaagccgg
aaacccaaagtgttcgcgatgaaagtgctcaagcgatttcgaagttcatcaaggaaaagt
atgtgaatgccaaaatattgcatctcggagaaattcaaagtgctttcgtcgagttgagct
ttttccatcgtacatccgctttcacttggcatcaaatcgctgaacgacaacctccaaagt
cttcatatcacaccgagaacttcgactttcaacaattcttcacagcacctccaaaaatct
gtttcaacaattcgaattctttactctctgttcctctggaaatgacatcacttcttaaac
tcgtcatcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGTCGTTCTGGCATCAGCTGAAAG 610 243 611 Antisense
AAGAAACTTGCAGACTCGAGGGCCC 407 151 633 Antisense
CTCGAGGGCCCAAGCATCTCAAAAG 228 233 647 Antisense
AAATCGCTGAACGACAACCTCCAAA 376 115 944 Antisense
CTCCAAAGTCTTCATATCACACCGA 621 235 962 Antisense
ATCACACCGAGAACTTCGACTTTCA 692 27 977 Antisense
TCGACTTTCAACAATTCTTCACAGC 35 603 992 Antisense
TTCTTCACAGCACCTCCAAAAATCT 208 691 1006 Antisense
CAATTCGAATTCTTTACTCTCTGTT 46 181 1038 Antisense
TGTTCCTCTGGAAATGACATCACTT 320 561 1059 Antisense
ATCACTTCTTAAACTCGTCATCTTC 675 27 1077 Antisense
Sequence Source Affymetrix Proprietary Database