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[176795_at]

Description Y49C4A.3 /REP_DB=WormBase Gene ID /WP=CE26126 /GB=AAK72314.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 05      6grp_cgc > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 4.4
(-2.5)
A 		0.6
(-3)
A 		25.6
(0.1)
A 		48.7
(3)
A 		48
B 35.9
(3)
A 		14.4
(-1.8)
A 		9.2
(-3)
A 		10.9
(-2.6)
A 		27
C 35.5
(-0.4)
A 		1.7
(-3)
A 		5.6
(-2.7)
A 		81
(3)
P 		79
avr 25.3
(-0.1) 		5.6
(-3) 		13.5
(-1.9) 		46.9
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 8.4
(1.7)
A 		4.9
(-1)
A 		3.6
(-2.1)
A 		2.4
(-3)
A 		10
(3)
A 		4.6
(-1.3)
A 		8
B 19.3
(1.7)
A 		22.4
(2.5)
A 		1
(-3)
A 		1.6
(-2.8)
A 		3.1
(-2.5)
A 		24.3
(3)
A 		23
C 8.7
(-2.5)
A 		29.6
(1.3)
A 		5.8
(-3)
A 		39.4
(3)
A 		10.7
(-2.1)
A 		19.8
(-0.5)
A 		34
avr 12.1
(0.3) 		19
(3) 		3.5
(-3) 		14.5
(1.3) 		7.9
(-1.3) 		16.2
(1.9) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.6
(-1.7)
A 		0.1
(-3)
A 		6.7
(2.7)
A 		7.1
(3)
A 		7
B 11.5
(3)
A 		3.6
(-2)
A 		2.1
(-3)
A 		2.3
(-2.9)
A 		9
C 11.7
(2.1)
A 		0.5
(-3)
A 		2
(-2.3)
A 		13.7
(3)
P 		13
avr 8.3
(3) 		1.4
(-3) 		3.6
(-1.1) 		7.7
(2.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.6
(-0.5)
A 		1.7
(-0.3)
A 		0.8
(-2.5)
A 		0.6
(-3)
A 		3
(3)
A 		1.1
(-1.8)
A 		2
B 6.7
(1.4)
A 		7.5
(1.9)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		1.3
(-2.3)
A 		9.1
(3)
A 		9
C 3.2
(-1.6)
A 		9
(3)
A 		1.5
(-3)
A 		7.9
(2.1)
A 		3.5
(-1.4)
A 		6.6
(1.1)
A 		8
avr 3.8
(0.3) 		6.1
(3) 		0.9
(-3) 		3
(-0.6) 		2.6
(-1) 		5.6
(2.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176795_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15834
Sequence Type Exemplar sequence
Representative Public ID Y49C4A.3 NCBI
Target Description Y49C4A.3 /REP_DB=WormBase Gene ID /WP=CE26126 /GB=AAK72314.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070899
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070899 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-37) (srbc-37) mRNA, complete cds. None
GENEFINDER00000005338 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:699909:710218:1 None
Y49C4A.3 ENSEMBL cdna:known chromosome:CEL140:V:702390:703575:1 gene:Y49C4A.3 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:702019-703512(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-37
Ensembl Y49C4A.3
Entrez Gene 3565631 Entrez gene
SwissProt Q5FAM7 EMBL-EBI
WormBase CE38122 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503300 Serpentine Receptor, class BC (class B-like) family member (srbc-37) [Caenorhabditis elegans] gb|AAW88388.1| Hypothetical protein Y49C4A.3 [Caenorhabditis elegans] 1.0E-151
blast NP_503299 Serpentine Receptor, class X family member (srx-5) [Caenorhabditis elegans] gb|AAK72315.1| Serpentine receptor, class x protein 5 [Caenorhabditis elegans] 1.0E-145
blast NP_503301 Serpentine Receptor, class BC (class B-like) family member (srbc-38) [Caenorhabditis elegans] gb|AAW88387.1| Hypothetical protein Y49C4A.2 [Caenorhabditis elegans] 1.0E-138
blast NP_503300 Serpentine Receptor, class BC (class B-like) family member (srbc-37) [Caenorhabditis elegans] gb|AAW88388.1| Hypothetical protein Y49C4A.3 [Caenorhabditis elegans] 1.0E-129
blast NP_503301 Serpentine Receptor, class BC (class B-like) family member (srbc-38) [Caenorhabditis elegans] gb|AAW88387.1| Hypothetical protein Y49C4A.2 [Caenorhabditis elegans] 1.0E-121
blast NP_503302 Serpentine Receptor, class BC (class B-like) family member (srbc-39) [Caenorhabditis elegans] gb|AAK72312.1| Hypothetical protein Y49C4A.1 [Caenorhabditis elegans] 2.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.1E-79
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 5.1E-72
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 8.8E-81
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 4.2E-62
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503300.2 6 4-26,46-68,83-105,125-147,179-201,221-243
Y49C4A.3 6 4-26,46-68,83-105,125-147,179-201,221-243
GENEFINDER00000005338 25 7-29,39-61,125-147,177-199,220-239,273-295,315-337,352-374,394-416,448-470,493-515,520-542,562-584,594-616,637-659,692-714,735-757,767-786,836-855,939-956,976-998,1008-1030,1051-1073,1104-1123,1143-1165
Sequence
Target Sequence 
>C. ELEGANS:176795_AT
atcctgggagcaatatttttcggtgcaacagagtcttttgtgctttttggattttgttcg
tataaaatggaaattccatcgatgtgtcgattttttggttgtgctattaacacgtgtttc
aatactttttggagtgctcatagaacgataatattcactatcattattaatttatcaatt
ttgctctccgtgaaactttttattttaaaccattttcaattaggagtcactaataaaatg
ctgtcagaagcaaatcgattagcattaattgatgtttgcacggtttttatttttgatata
atcccggcggtttgcgggaatttgtggccaactgcatacatttttgcttttgatgtaagt
tttgatgtacacattagcctttttctaatttttaattttgtaacaataattaaaatcgca
agccttcgtccttattattactttcagaacgtggggccgtataatggcaatctgaaaatt
ataggatgttcgatagaatcgtttattgtgtcaactgtcattatgcgttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCTGGGAGCAATATTTTTCGGTG 526 39 415 Antisense
GGTGCAACAGAGTCTTTTGTGCTTT 482 501 436 Antisense
GGTTGTGCTATTAACACGTGTTTCA 60 509 511 Antisense
CAATTTTGCTCTCCGTGAAACTTTT 418 179 590 Antisense
GGTTTGCGGGAATTTGTGGCCAACT 444 505 723 Antisense
GTGGCCAACTGCATACATTTTTGCT 144 493 738 Antisense
TGATGTACACATTAGCCTTTTTCTA 218 567 777 Antisense
TAAAATCGCAAGCCTTCGTCCTTAT 630 639 825 Antisense
GCCTTCGTCCTTATTATTACTTTCA 37 283 836 Antisense
TACTTTCAGAACGTGGGGCCGTATA 404 627 853 Antisense
GTGTCAACTGTCATTATGCGTTCAA 132 487 922 Antisense
Sequence Source Affymetrix Proprietary Database