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[176794_at]

Description Y51H7C.5 /REP_DB=WormBase Gene ID /WP=CE26150 /GB=AAK39344.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 22      4grp_highest_8_8 > 40      4grp_high_8_8 > 50      6grp_highest_nonorm > 81      6grp_total > 12      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 390.3
(2.8)
P 		393.7
(3)
P 		342.9
(0.7)
P 		260.1
(-3)
P 		134
B 407.2
(3)
P 		345.1
(-0.5)
P 		331.7
(-1.2)
P 		300.2
(-3)
P 		107
C 403.5
(3)
P 		344.2
(0.1)
P 		374.4
(1.6)
P 		282
(-3)
P 		122
avr 400.3
(3) 		361
(1) 		349.7
(0.5) 		280.8
(-3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 234.4
(-1.5)
P 		374
(3)
P 		268.7
(-0.4)
P 		338.5
(1.9)
P 		247.1
(-1.1)
P 		186.5
(-3)
P 		188
B 332.3
(3)
P 		290.4
(1.3)
P 		332.3
(3)
P 		286.1
(1.1)
P 		276.1
(0.7)
P 		186
(-3)
P 		146
C 336.3
(3)
P 		312.5
(1.9)
P 		311.6
(1.9)
P 		284.7
(0.7)
P 		306.2
(1.7)
P 		201.8
(-3)
P 		135
avr 301
(1.9) 		325.6
(3) 		304.2
(2) 		303.1
(2) 		276.5
(0.8) 		191.4
(-3) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 142.1
(3)
P 		85.5
(-0.3)
P 		89.6
(-0)
P 		38.1
(-3)
P 		104
B 129.9
(3)
P 		85.2
(-1.1)
P 		76.9
(-1.8)
P 		64
(-3)
P 		66
C 133.6
(3)
P 		99
(0.6)
P 		130.5
(2.8)
P 		47.6
(-3)
P 		86
avr 135.2
(3) 		89.9
(-0.2) 		99
(0.5) 		49.9
(-3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 43.2
(-3)
P 		133
(3)
P 		58.5
(-2)
P 		85.9
(-0.1)
P 		74.6
(-0.9)
P 		45.4
(-2.9)
P 		90
B 115.6
(3)
P 		96.7
(0.5)
P 		80.7
(-1.5)
P 		75.8
(-2.2)
P 		112.2
(2.6)
P 		69.4
(-3)
P 		46
C 124.6
(3)
P 		95.4
(0.4)
P 		79.3
(-1)
P 		57.3
(-3)
P 		99.1
(0.7)
P 		67.6
(-2.1)
P 		67
avr 94.5
(1.2) 		108.4
(3) 		72.8
(-1.5) 		73
(-1.5) 		95.3
(1.3) 		60.8
(-3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176794_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5390
Sequence Type Exemplar sequence
Representative Public ID Y51H7C.5 NCBI
Target Description Y51H7C.5 /REP_DB=WormBase Gene ID /WP=CE26150 /GB=AAK39344.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061568(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061568 NCBI Caenorhabditis elegans Y51H7C.5 (Y51H7C.5) mRNA, complete cds. 11/11 None
Y51H7C.5 ENSEMBL cdna:known chromosome:CEL140:II:1412415:1415110:1 gene:Y51H7C.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035526 8/11 Cross Hyb Matching Probes None
GENEFINDER00000035550 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1412435-1415109(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H7C.5
Entrez Gene 190176 Entrez gene
WormBase CE32079 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_493969 Y51H7C.5 [Caenorhabditis elegans] 1.0E-178
blast AAK39344 Hypothetical protein Y51H7C.5 [Caenorhabditis elegans] 1.0E-69
blast CAE70291 Hypothetical protein CBG16811 [Caenorhabditis briggsae] 2.0E-24
Sequence
Target Sequence 
>C. ELEGANS:176794_AT
atcgtattggcctatatctcctgccaagccttttacggaaggaaaaatcgacaatgtgga
tgaaacgagcgttcaagtacgccgaaccaccgaatatcacgaatttgacgcttcacggaa
aggatgtgctcacgttagtgttggtctgctctggacaacaaactacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGTATTGGCCTATATCTCCTGCC 594 33 569 Antisense
TATTGGCCTATATCTCCTGCCAAGC 266 665 573 Antisense
TCTCCTGCCAAGCCTTTTACGGAAG 320 609 585 Antisense
GACAATGTGGATGAAACGAGCGTTC 250 365 618 Antisense
ACGAGCGTTCAAGTACGCCGAACCA 22 55 633 Antisense
TACGCCGAACCACCGAATATCACGA 263 647 646 Antisense
ATATCACGAATTTGACGCTTCACGG 375 19 662 Antisense
GACGCTTCACGGAAAGGATGTGCTC 371 381 675 Antisense
GGATGTGCTCACGTTAGTGTTGGTC 364 515 690 Antisense
GTTAGTGTTGGTCTGCTCTGGACAA 411 447 702 Antisense
TCTGCTCTGGACAACAAACTACAAC 267 609 713 Antisense
Sequence Source Affymetrix Proprietary Database