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[176793_at]

Description F52C6.13 /REP_DB=WormBase Gene ID /WP=CE17099 /GB=AAB94983.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 17      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 10
(-3)
A 		27.5
(-0.8)
A 		19.2
(-1.8)
A 		57.8
(3)
A 		48
B 20.4
(-1)
A 		41.8
(3)
A 		9.3
(-3)
A 		15.3
(-1.9)
A 		33
C 11.7
(-2)
A 		2.7
(-3)
A 		34.3
(0.5)
A 		56.3
(3)
A 		54
avr 14
(-3) 		24
(-0.9) 		20.9
(-1.6) 		43.1
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 6
(-2.4)
A 		3.2
(-3)
A 		27
(1.9)
A 		29.4
(2.4)
M 		32.3
(3)
A 		14.1
(-0.8)
A 		29
B 12.6
(-1.2)
A 		16.3
(-0.4)
A 		4.7
(-3)
A 		28
(2.2)
A 		31.4
(3)
A 		26.9
(2)
A 		27
C 1.5
(-3)
A 		4.3
(-2.7)
A 		24.4
(-0.4)
A 		54.8
(3)
A 		9.8
(-2.1)
A 		30.1
(0.2)
A 		53
avr 6.7
(-3) 		7.9
(-2.8) 		18.7
(-0.7) 		37.4
(3) 		24.5
(0.5) 		23.7
(0.3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.7
(-3)
A 		6
(-0.1)
A 		5
(-1.4)
A 		8.5
(3)
A 		5
B 6.5
(0.2)
A 		10.3
(3)
A 		2.2
(-3)
A 		3.3
(-2.2)
A 		8
C 3.9
(-1.3)
A 		0.8
(-3)
A 		11.9
(3)
A 		9.5
(1.7)
A 		11
avr 4.7
(-3) 		5.7
(-0.5) 		6.4
(1.3) 		7.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.1
(-3)
A 		1.1
(-3)
A 		5.9
(0.3)
A 		7.4
(1.3)
M 		9.8
(3)
A 		3.4
(-1.4)
A 		9
B 4.4
(-1.3)
A 		5.4
(-0.8)
A 		1.1
(-3)
A 		7.4
(0.2)
A 		12.8
(3)
A 		10
(1.6)
A 		12
C 0.6
(-3)
A 		1.3
(-2.6)
A 		6.2
(0.2)
A 		11
(3)
A 		3.2
(-1.5)
A 		10.1
(2.5)
A 		10
avr 2
(-3) 		2.6
(-2.5) 		4.4
(-0.8) 		8.6
(3) 		8.6
(3) 		7.8
(2.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176793_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5387
Sequence Type Exemplar sequence
Representative Public ID F52C6.13 NCBI
Target Description F52C6.13 /REP_DB=WormBase Gene ID /WP=CE17099 /GB=AAB94983.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061730(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061730 NCBI Caenorhabditis elegans F52C6.13 (F52C6.13) mRNA, complete cds. 11/11 None
F52C6.13 ENSEMBL cdna:known chromosome:CEL140:II:1930191:1930748:-1 gene:F52C6.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1930189-1930747(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52C6.13
Entrez Gene 186095 Entrez gene
SwissProt Q8MYD3 EMBL-EBI
WormBase CE17099 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94983 Hypothetical protein F52C6.13 [Caenorhabditis elegans] ref|NP_494131.1| F52C6.13 [Caenorhabditis elegans] 5.0E-83
Sequence
Target Sequence 
>C. ELEGANS:176793_AT
acaagtcattttgaatcgcgcgcgcgcaatctgttcggtggagcgcgtttccattagaga
aaacgaaaattgctattcaacgataaatttttcatgttttccattttttatttcacgttt
ttcagaaattgtctttttcttcccactttcagatctgaaagtttcatttcctgaggatgt
gcacaatttcattaaccctgtttctccctgtttaaacctttttcttacaatttcattaac
ccatttccgctttctggattcccacggagttggacaagtctgccggaaactagatgttca
ggatcctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAGTCATTTTGAATCGCGCGCGC 24 115 48 Antisense
TTTGAATCGCGCGCGCGCAATCTGT 680 667 57 Antisense
CAATCTGTTCGGTGGAGCGCGTTTC 329 179 74 Antisense
GGTGGAGCGCGTTTCCATTAGAGAA 301 499 84 Antisense
TTTCTTCCCACTTTCAGATCTGAAA 595 671 183 Antisense
AGATCTGAAAGTTTCATTTCCTGAG 88 67 198 Antisense
ATTTCCTGAGGATGTGCACAATTTC 642 15 213 Antisense
GCACAATTTCATTAACCCTGTTTCT 543 317 228 Antisense
TACAATTTCATTAACCCATTTCCGC 444 641 273 Antisense
TGGACAAGTCTGCCGGAAACTAGAT 558 547 318 Antisense
GAAACTAGATGTTCAGGATCCTCAA 374 355 333 Antisense
Sequence Source Affymetrix Proprietary Database