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[176789_at]

Description F14H12.2 /REP_DB=WormBase Gene ID /WP=CE07062 /GB=AAK68324.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 3.1
(-2.9)
A 		2.3
(-3)
A 		1.8
(-3)
A 		70.8
(3)
A 		69
B 3.6
(3)
A 		1.6
(-3)
A 		3.1
(1.5)
A 		1.9
(-2.1)
A 		2
C 4.1
(-1.9)
A 		5.1
(-1.4)
A 		1.9
(-3)
A 		13.8
(3)
A 		12
avr 3.6
(-2.7) 		3
(-2.8) 		2.3
(-3) 		28.8
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 6.3
(2.1)
A 		3.3
(-1.8)
A 		2.4
(-3)
A 		3.8
(-1.2)
A 		3.2
(-2)
A 		7
(3)
A 		5
B 7.3
(2.9)
A 		7.4
(3)
A 		4.4
(-0.7)
A 		3.4
(-1.9)
A 		3.8
(-1.4)
A 		2.5
(-3)
A 		5
C 4.5
(0.4)
A 		1.3
(-2.9)
A 		7.1
(3)
A 		6.5
(2.4)
A 		1.2
(-3)
A 		1.3
(-2.9)
A 		6
avr 6
(3) 		4
(-0.6) 		4.6
(0.5) 		4.6
(0.5) 		2.7
(-3) 		3.6
(-1.4) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.1
(-2.6)
A 		0.5
(-3)
A 		0.5
(-3)
A 		10.4
(3)
A 		10
B 1.2
(3)
A 		0.4
(-3)
A 		0.7
(-0.8)
A 		0.4
(-3)
A 		1
C 1.4
(-0.4)
A 		1.5
(0)
A 		0.7
(-3)
A 		2.3
(3)
A 		2
avr 1.2
(-2.1) 		0.8
(-2.7) 		0.6
(-3) 		4.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.2
(0.5)
A 		1.2
(0.5)
A 		0.5
(-3)
A 		1
(-0.5)
A 		1
(-0.5)
A 		1.7
(3)
A 		1
B 2.5
(3)
A 		2.4
(2.6)
A 		1.1
(-2.3)
A 		0.9
(-3)
A 		1.6
(-0.4)
A 		0.9
(-3)
A 		2
C 1.7
(2.6)
A 		0.4
(-3)
A 		1.8
(3)
A 		1.3
(0.9)
A 		0.4
(-3)
A 		0.4
(-3)
A 		1
avr 1.8
(3) 		1.3
(-0.8) 		1.1
(-2.3) 		1.1
(-2.3) 		1
(-3) 		1
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176789_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16734
Sequence Type Exemplar sequence
Representative Public ID F14H12.2 NCBI
Target Description F14H12.2 /REP_DB=WormBase Gene ID /WP=CE07062 /GB=AAK68324.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076345(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076345 NCBI Caenorhabditis elegans F14H12.2 (F14H12.2) mRNA, complete cds. 11/11 None
GENEFINDER00000002240 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4350471:4352717:1 11/11 None
SNAP00000002233 ENSEMBL cdna:SNAP chromosome:CEL140:X:4351764:4352717:1 10/11 None
F14H12.2 ENSEMBL cdna:known chromosome:CEL140:X:4350471:4352717:1 gene:F14H12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4350471-4352718(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14H12.2
Entrez Gene 184502 Entrez gene
SwissProt Q966K6 EMBL-EBI
WormBase CE07062 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68324 Hypothetical protein F14H12.2 [Caenorhabditis elegans] ref|NP_508746.1| F14H12.2 [Caenorhabditis elegans] 1.0E-170
blast AAK68324 Hypothetical protein F14H12.2 [Caenorhabditis elegans] ref|NP_508746.1| F14H12.2 [Caenorhabditis elegans] 1.0E-164
blast AAK68324 Hypothetical protein F14H12.2 [Caenorhabditis elegans] ref|NP_508746.1| F14H12.2 [Caenorhabditis elegans] 3.0E-93
blast NP_494509 F14D2.7 [Caenorhabditis elegans] gb|AAB94961.1| Hypothetical protein F14D2.7 [Caenorhabditis elegans] 8.0E-31
blast NP_494509 F14D2.7 [Caenorhabditis elegans] gb|AAB94961.1| Hypothetical protein F14D2.7 [Caenorhabditis elegans] 9.0E-31
blast NP_494509 F14D2.7 [Caenorhabditis elegans] gb|AAB94961.1| Hypothetical protein F14D2.7 [Caenorhabditis elegans] 2.0E-14
blast AAF99971 Hypothetical protein F52G3.3 [Caenorhabditis elegans] ref|NP_510742.1| F52G3.3 [Caenorhabditis elegans] 3.0E-14
Sequence
Target Sequence 
>C. ELEGANS:176789_AT
atcggcaagtaaactgcgcagcatgatggacaaagatttccgaaaaggtccacaggcgat
tccaaatgccttccctgcttttctaaagaatcttaatatggacctgcaagaaaaggatgt
gacctattgtagaaattgtaacacactgtttcatgggaatataatcactaacaaataccc
acactgtggaaacgaaaaaatgattgaaggaaagctcttccaatggaaggaatcaatctt
tgttgtgacgaaaaacgtcttcaaagttaaaagacttaacaaacgcttcgaagtttacga
tgcctactatgtgttagccgcttttggagagtttatagacggaaaagtttgtggccacta
cgtttcatggattcggaaacacactaccaattgtaaagaatctcataatgtttacaatga
taatgacaacgacaactgttttgttaatgattattttgattgcgtcaacgatgaaaagct
caacggctcaacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGGCAAGTAAACTGCGCAGCATG 107 35 369 Antisense
GATTTCCGAAAAGGTCCACAGGCGA 118 407 403 Antisense
ACAGGCGATTCCAAATGCCTTCCCT 584 107 420 Antisense
TGCCTTCCCTGCTTTTCTAAAGAAT 584 585 435 Antisense
ATAATCACTAACAAATACCCACACT 358 193 529 Antisense
AACGCTTCGAAGTTTACGATGCCTA 330 145 650 Antisense
GATGCCTACTATGTGTTAGCCGCTT 507 389 667 Antisense
GTGTTAGCCGCTTTTGGAGAGTTTA 35 487 679 Antisense
GTTTGTGGCCACTACGTTTCATGGA 470 449 715 Antisense
GGATTCGGAAACACACTACCAATTG 417 507 737 Antisense
GATGAAAAGCTCAACGGCTCAACAG 548 411 838 Antisense
Sequence Source Affymetrix Proprietary Database