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[176788_at]

Description Y51H7C.4 /REP_DB=WormBase Gene ID /WP=CE26149 /GB=AAK39337.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 12      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 76      6grp_total > 23      4grp_total > 52      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 361
1 2 3 4 range
A 1480.3
(2.1)
P 		1533.1
(3)
P 		1191.4
(-3)
P 		1205.5
(-2.8)
P 		342
B 1341.4
(-0.4)
P 		1419.6
(2.3)
P 		1440.3
(3)
P 		1264.3
(-3)
P 		176
C 1406.9
(3)
P 		1324
(0.9)
P 		1355.7
(1.7)
P 		1172.5
(-3)
P 		234
avr 1409.5
(2.5) 		1425.6
(3) 		1329.1
(0.3) 		1214.1
(-3) 		212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 457
1 2 3 4 5 6 range
A 1089.3
(-0.5)
P 		1332.4
(3)
P 		1099.9
(-0.4)
P 		1110
(-0.2)
P 		936
(-2.8)
P 		921.1
(-3)
P 		411
B 1238.3
(3)
P 		1170.5
(1.8)
P 		1132.8
(1.2)
P 		885.3
(-3)
P 		949.2
(-1.9)
P 		905.6
(-2.7)
P 		353
C 1269.1
(3)
P 		1030.8
(-0.6)
P 		1233.1
(2.5)
P 		1114.3
(0.6)
P 		875.9
(-3)
P 		933.6
(-2.1)
P 		393
avr 1198.9
(3) 		1177.9
(2.5) 		1155.3
(2.1) 		1036.5
(-0.5) 		920.4
(-3) 		920.1
(-3) 		279
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 363
1 2 3 4 range
A 539
(3)
P 		332.8
(-0.4)
P 		311.5
(-0.8)
P 		176.5
(-3)
P 		363
B 427.8
(3)
P 		350.6
(0.1)
P 		333.8
(-0.6)
P 		269.4
(-3)
P 		158
C 465.7
(2.9)
P 		380.6
(1)
P 		472.5
(3)
P 		197.7
(-3)
P 		275
avr 477.5
(3) 		354.7
(0.2) 		372.6
(0.6) 		214.5
(-3) 		263

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 273
1 2 3 4 5 6 range
A 200.8
(-3)
P 		473.9
(3)
P 		239.5
(-2.1)
P 		281.5
(-1.2)
P 		282.5
(-1.2)
P 		224.3
(-2.5)
P 		273
B 430.9
(3)
P 		389.6
(1.7)
P 		275.1
(-1.8)
P 		234.5
(-3)
P 		385.6
(1.6)
P 		337.7
(0.2)
P 		196
C 470.4
(3)
P 		314.5
(-0.8)
P 		313.8
(-0.8)
P 		224.1
(-3)
P 		283.4
(-1.6)
P 		312.5
(-0.8)
P 		246
avr 367.4
(2) 		392.7
(3) 		276.1
(-1.8) 		246.7
(-3) 		317.2
(-0.1) 		291.5
(-1.2) 		146
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176788_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5971
Sequence Type Exemplar sequence
Representative Public ID Y51H7C.4 NCBI
Target Description Y51H7C.4 /REP_DB=WormBase Gene ID /WP=CE26149 /GB=AAK39337.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061569(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061569 NCBI Caenorhabditis elegans Y51H7C.4 (Y51H7C.4) mRNA, complete cds. 11/11 None
SNAP00000035526 ENSEMBL cdna:SNAP chromosome:CEL140:II:1409065:1439609:1 11/11 None
GENEFINDER00000035550 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1412437:1420071:1 11/11 None
Y51H7C.4 ENSEMBL cdna:known chromosome:CEL140:II:1417900:1420071:1 gene:Y51H7C.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1417898-1420463(+) 81.2 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H7C.4
Entrez Gene 190175 Entrez gene
SwissProt Q95XY6 EMBL-EBI
WormBase CE28869 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE70291 Hypothetical protein CBG16811 [Caenorhabditis briggsae] 1.0E-104
blast CAE70291 Hypothetical protein CBG16811 [Caenorhabditis briggsae] 2.0E-97
blast AAK39344 Hypothetical protein Y51H7C.5 [Caenorhabditis elegans] 2.0E-97
blast AAK39337 Hypothetical protein Y51H7C.4 [Caenorhabditis elegans] ref|NP_493970.1| Y51H7C.4 [Caenorhabditis elegans] 1.0E-95
blast AAK39344 Hypothetical protein Y51H7C.5 [Caenorhabditis elegans] 8.0E-88
blast AAK39337 Hypothetical protein Y51H7C.4 [Caenorhabditis elegans] ref|NP_493970.1| Y51H7C.4 [Caenorhabditis elegans] 8.0E-59
blast AAK39334 Hypothetical protein Y51H7C.3 [Caenorhabditis elegans] ref|NP_493973.1| Y51H7C.3 [Caenorhabditis elegans] 2.0E-51
blast CAE70291 Hypothetical protein CBG16811 [Caenorhabditis briggsae] 5.0E-29
Sequence
Target Sequence 
>C. ELEGANS:176788_AT
cccgctaatctcaatgtctctcggccaaacagcaatctatctatccggtacaatcgacct
ctcctcggagcccccaatcccaatttggctccgtaatggagattttcttataatgcacgg
agatcaacgtctcgtgtaccatgcaattccgtgtatcggctcaattccgaagcgacgtgg
caatcgtggatctatgatggatgaggatcaggagcattttgagccgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCGCTAATCTCAATGTCTCTCGGC 146 261 204 Antisense
GTCTCTCGGCCAAACAGCAATCTAT 75 471 219 Antisense
AGCAATCTATCTATCCGGTACAATC 115 77 234 Antisense
ATCTATCCGGTACAATCGACCTCTC 297 29 242 Antisense
CCCAATCCCAATTTGGCTCCGTAAT 144 257 276 Antisense
AGATCAACGTCTCGTGTACCATGCA 649 65 324 Antisense
GTACCATGCAATTCCGTGTATCGGC 296 457 339 Antisense
GTGTATCGGCTCAATTCCGAAGCGA 172 487 354 Antisense
AATTCCGAAGCGACGTGGCAATCGT 674 177 366 Antisense
GTGGCAATCGTGGATCTATGATGGA 515 489 380 Antisense
GGATCAGGAGCATTTTGAGCCGCCA 306 511 408 Antisense
Sequence Source Affymetrix Proprietary Database