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[176784_s_at]

Description C46C11.3 /REP_DB=WormBase Gene ID /WP=CE04218 /GB=AAK68255.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 11      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 41      6grp_total > 23      4grp_total > 31      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 667
1 2 3 4 range
A 1048.3
(3)
P 		429.3
(-3)
P 		541
(-1.9)
P 		707.2
(-0.3)
P 		619
B 896.5
(3)
P 		635.3
(-0.5)
P 		451.6
(-3)
P 		696.6
(0.3)
P 		445
C 1096.6
(3)
P 		456
(-3)
P 		634.2
(-1.3)
P 		747.6
(-0.3)
P 		641
avr 1013.8
(3) 		506.9
(-3) 		542.3
(-2.6) 		717.1
(-0.5) 		507

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 685
1 2 3 4 5 6 range
A 910.7
(3)
P 		727.2
(0.8)
P 		714.9
(0.6)
P 		581.8
(-1)
P 		652.3
(-0.1)
P 		414.8
(-3)
P 		496
B 1099.8
(3)
P 		849.7
(0.6)
P 		928.9
(1.4)
P 		910.7
(1.2)
P 		719.1
(-0.6)
P 		470.8
(-3)
P 		629
C 780.6
(1)
P 		817.3
(1.5)
P 		875.4
(2.3)
P 		926.8
(3)
P 		493.9
(-3)
P 		562.9
(-2)
P 		433
avr 930.4
(3) 		798.1
(1.2) 		839.7
(1.8) 		806.4
(1.3) 		621.8
(-1.1) 		482.8
(-3) 		448
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 289
1 2 3 4 range
A 381.7
(3)
P 		93.2
(-3)
P 		141.4
(-2)
P 		103.5
(-2.8)
P 		289
B 285.9
(3)
P 		156.9
(-1.3)
P 		104.6
(-3)
P 		148.4
(-1.6)
P 		181
C 363
(3)
P 		131.1
(-2.9)
P 		221
(-0.6)
P 		126.1
(-3)
P 		237
avr 343.5
(3) 		127.1
(-3) 		155.7
(-2.2) 		126
(-3) 		218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 282
1 2 3 4 5 6 range
A 167.9
(-0.5)
P 		258.6
(3)
P 		155.7
(-0.9)
P 		147.6
(-1.2)
P 		196.8
(0.6)
P 		101
(-3)
P 		158
B 382.7
(3)
P 		282.8
(0.1)
P 		225.6
(-1.6)
P 		241.2
(-1.1)
P 		292.2
(0.4)
P 		175.6
(-3)
P 		207
C 289.3
(3)
P 		249.4
(1.2)
P 		222.8
(-0.1)
P 		186.4
(-1.8)
P 		159.8
(-3)
P 		188.4
(-1.7)
P 		130
avr 280
(3) 		263.6
(2.2) 		201.4
(-0.8) 		191.7
(-1.2) 		216.3
(-0.1) 		155
(-3) 		125
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176784_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17149
Sequence Type Exemplar sequence
Representative Public ID C46C11.3 NCBI
Target Description C46C11.3 /REP_DB=WormBase Gene ID /WP=CE04218 /GB=AAK68255.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076391(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076391 NCBI Caenorhabditis elegans C46C11.3 (C46C11.3) mRNA, complete cds. 11/11 None
C46C11.3 ENSEMBL cdna:known chromosome:CEL140:X:4629027:4631787:1 gene:C46C11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000023781 8/11 Cross Hyb Matching Probes None
SNAP00000023773 8/11 Cross Hyb Matching Probes None
SNAP00000023774 3/11 Cross Hyb Matching Probes None
GENEFINDER00000023782 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4629027-4631564(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46C11.3
Entrez Gene 180735 Entrez gene
SwissProt Q966P3 EMBL-EBI
WormBase CE04218 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508792 C46C11.3 [Caenorhabditis elegans] gb|AAK68255.1| Hypothetical protein C46C11.3 [Caenorhabditis elegans] 1.0E-138
blast CAE68623 Hypothetical protein CBG14510 [Caenorhabditis briggsae] 1.0E-123
blast XP_393246 PREDICTED: similar to CG15279-PA, isoform A [Apis mellifera] 1.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508792.1 4 35-57,115-137,149-171,198-217
C46C11.3 4 35-57,115-137,149-171,198-217
Sequence
Target Sequence 
>C. ELEGANS:176784_S_AT
gacgacgagctgggcaacgattgatttcgtcaacaccgactaccacccaattcacgtaga
tttgggagtctggggagagtacagaaaaattaatactttcaaaaaagtcacagttgaatg
gattcctcatttcccggccccaccagagaatatcctgcgacttgcggacactcatttgca
acattactaccgatcacaagctttcatgggatgcttcggagcagtcattcttttgtgcac
caacgttctagctgtttacaccttctatcatcatcgttacatgtacaaaagagccgtcgc
tgctctttatcttgttgttgccatgtgcatcttcggagcaatcgaaattctatcaagtag
catcaatgaatggaacaccgccgttgctcagaatggcgagttcgattacgaagccggcaa
aaagatgggttactcaacaagacttgctcaaggagccatcgccacttctttgatcgcatg
cctggcatttgctctaggatcacacaaacaaaaaggagagcacgcggctacagcagaact
ggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGACGAGCTGGGCAACGATTGAT 574 379 162 Antisense
TTGATTTCGTCAACACCGACTACCA 117 703 182 Antisense
CGACTACCACCCAATTCACGTAGAT 637 247 198 Antisense
AGAATATCCTGCGACTTGCGGACAC 443 73 308 Antisense
ACTACCGATCACAAGCTTTCATGGG 371 101 347 Antisense
GGAGCAGTCATTCTTTTGTGCACCA 696 519 379 Antisense
GTGCACCAACGTTCTAGCTGTTTAC 305 481 396 Antisense
TACACCTTCTATCATCATCGTTACA 539 643 418 Antisense
CAATGAATGGAACACCGCCGTTGCT 86 181 525 Antisense
GCATGCCTGGCATTTGCTCTAGGAT 691 309 637 Antisense
GCACGCGGCTACAGCAGAACTGGAA 339 315 681 Antisense
Sequence Source Affymetrix Proprietary Database