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[176783_s_at]

Description W02D3.11 /REP_DB=WormBase Gene ID /WP=CE26020 /GB=AAK21490.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 55      4grp_highest_8_8 > 18      4grp_high_8_8 > 63      6grp_highest_nonorm > 74      6grp_total > 56      4grp_total > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 282
1 2 3 4 range
A 429.5
(-1.3)
P 		350.5
(-3)
P 		632.6
(3)
P 		373.3
(-2.5)
P 		282
B 376.7
(-3)
P 		528.2
(3)
P 		455.7
(0.1)
P 		380.1
(-2.9)
P 		152
C 440.5
(-2.2)
P 		505.7
(0.4)
P 		571.4
(3)
P 		421
(-3)
P 		150
avr 415.6
(-2.1) 		461.5
(-0.4) 		553.2
(3) 		391.5
(-3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 616
1 2 3 4 5 6 range
A 451.5
(-3)
P 		646.3
(1.7)
P 		629.5
(1.3)
P 		468.6
(-2.6)
P 		537.6
(-0.9)
P 		701.7
(3)
P 		250
B 603.7
(-2)
P 		921.3
(2)
P 		764.6
(0)
P 		528.6
(-2.9)
P 		518.6
(-3)
P 		1006.4
(3)
P 		488
C 692.7
(-0.1)
P 		729.1
(0.3)
P 		811.5
(1.1)
P 		641.5
(-0.6)
P 		390.2
(-3)
P 		1006.1
(3)
P 		616
avr 582.6
(-1.6) 		765.6
(1) 		735.2
(0.6) 		546.2
(-2.1) 		482.1
(-3) 		904.7
(3) 		423
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 156.4
(2.5)
P 		76.1
(-1.8)
P 		165.4
(3)
P 		54.6
(-3)
P 		111
B 120.1
(1.7)
P 		130.5
(3)
P 		105.6
(-0)
P 		81
(-3)
P 		50
C 145.8
(0.5)
P 		145.4
(0.5)
P 		199.1
(3)
P 		71
(-3)
P 		128
avr 140.8
(1.9) 		117.3
(0.3) 		156.7
(3) 		68.9
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 83.2
(-3)
P 		229.9
(3)
P 		137.1
(-0.8)
P 		118.9
(-1.5)
P 		162.2
(0.2)
P 		170.8
(0.6)
P 		147
B 210.1
(-1.2)
P 		306.7
(1.3)
P 		185.7
(-1.8)
P 		140
(-3)
P 		210.7
(-1.2)
P 		375.3
(3)
P 		235
C 256.7
(0.7)
P 		222.5
(-0.3)
P 		206.5
(-0.7)
P 		129
(-2.9)
P 		126.3
(-3)
P 		336.8
(3)
P 		211
avr 183.3
(-1) 		253
(1.5) 		176.4
(-1.3) 		129.3
(-3) 		166.4
(-1.7) 		294.3
(3) 		165
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176783_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2242
Sequence Type Exemplar sequence
Representative Public ID W02D3.11 NCBI
Target Description W02D3.11 /REP_DB=WormBase Gene ID /WP=CE26020 /GB=AAK21490.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170888(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170888 NCBI Caenorhabditis elegans W02D3.11a (W02D3.11) mRNA, complete cds. 11/11 None
W02D3.11a ENSEMBL cdna:known chromosome:CEL140:I:6761411:6764480:-1 gene:W02D3.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_170889 8/11 Cross Hyb Matching Probes None
GENEFINDER00000014338 1/11 Cross Hyb Matching Probes None
SNAP00000014327 1/11 Cross Hyb Matching Probes None
W02D3.11b 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172395 2 1 NM_170888 176783_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6761444-6764409(-) 97.58 100.0
Public Domain and Genome References
Ensembl W02D3.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21490 Hypothetical protein W02D3.11a [Caenorhabditis elegans] ref|NP_740877.1| W02D3.11a [Caenorhabditis elegans] 0.0
blast CAE60444 Hypothetical protein CBG04052 [Caenorhabditis briggsae] 0.0
blast AAM48549 Hypothetical protein W02D3.11b [Caenorhabditis elegans] ref|NP_740878.1| W02D3.11b [Caenorhabditis elegans] 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.6E-13
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 4.8E-9
Sequence
Target Sequence 
>C. ELEGANS:176783_S_AT
gtgatccatacgccgcagaatcaagatattcggagtatggctatgaatcgcgggaaccat
attggcgtggtggttctggagggcctccatctattggaggaggtgttggaggaggcggag
caccgcttgctccaactggacgggatccttattcggtaggagaatcttgggctaatggag
caggagggccaggtgggccaccaccggtttcttctgatagagatcggtacggaagtggtg
gatatgcaagtgagccgtatgcacaaagagaagctggaggagctatgcgccgatcagaat
acggtcgtcctgatgatcgttattcaaagccagaaccatatggatattctagagaccgtg
actatggagcccctcaaaatcagcattttgtgctccgaatgcgtggagtaccattccgtg
ccagcgaggcagatgtctatgatttcttccatccaattcgaccgaatcaagtagaattgc
tccgtgatcaccaattccaacggccaagtggcgatgctcgtgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGATCCATACGCCGCAGAATCAAG 29 485 1037 Antisense
TTGGCGTGGTGGTTCTGGAGGGCCT 567 701 1098 Antisense
TGCTCCAACTGGACGGGATCCTTAT 95 579 1164 Antisense
CACCACCGGTTTCTTCTGATAGAGA 686 199 1235 Antisense
GCGCCGATCAGAATACGGTCGTCCT 596 287 1323 Antisense
CGGTCGTCCTGATGATCGTTATTCA 622 243 1338 Antisense
GACTATGGAGCCCCTCAAAATCAGC 421 373 1396 Antisense
ACCATTCCGTGCCAGCGAGGCAGAT 266 85 1446 Antisense
GTCTATGATTTCTTCCATCCAATTC 629 469 1471 Antisense
AAGTAGAATTGCTCCGTGATCACCA 463 157 1505 Antisense
ACGGCCAAGTGGCGATGCTCGTGTC 292 93 1536 Antisense
Sequence Source Affymetrix Proprietary Database