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[176782_s_at]

Description C46C11.2 /REP_DB=WormBase Gene ID /WP=CE27860 /GB=AAK68254.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 40      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 80      6grp_total > 53      4grp_total > 63      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 317
(3)
P 		214.1
(-2.5)
P 		309
(2.6)
P 		205.3
(-3)
P 		112
B 359.5
(3)
P 		157.1
(-3)
P 		292.6
(1)
P 		248.1
(-0.3)
P 		202
C 343
(2.2)
P 		203.1
(-3)
P 		364.6
(3)
P 		278.5
(-0.2)
P 		162
avr 339.8
(3) 		191.4
(-3) 		322.1
(2.3) 		244
(-0.9) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 163.6
(-2.3)
P 		207.3
(-0.6)
P 		295.6
(3)
P 		246.1
(1)
P 		146.5
(-3)
P 		205.3
(-0.6)
P 		149
B 234.5
(0.5)
P 		202.3
(-2.6)
P 		261.4
(3)
P 		254.5
(2.4)
P 		197.6
(-3)
P 		207.7
(-2.1)
P 		64
C 240.1
(-0.2)
P 		241.2
(-0.1)
P 		311
(3)
P 		211.9
(-1.5)
P 		177.5
(-3)
P 		204.1
(-1.8)
P 		134
avr 212.7
(-1) 		216.9
(-0.8) 		289.3
(3) 		237.5
(0.3) 		173.9
(-3) 		205.7
(-1.3) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 115.4
(3)
P 		46.5
(-1.8)
P 		80.8
(0.6)
P 		30.1
(-3)
P 		85
B 114.6
(3)
P 		38.8
(-3)
P 		67.8
(-0.7)
P 		52.9
(-1.9)
P 		76
C 113.5
(2)
P 		58.4
(-2.1)
P 		127.1
(3)
P 		47
(-3)
P 		80
avr 114.5
(3) 		47.9
(-2.6) 		91.9
(1.1) 		43.3
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 30.2
(-3)
P 		73.7
(3)
P 		64.4
(1.7)
P 		62.4
(1.4)
P 		44.2
(-1.1)
P 		50
(-0.3)
P 		44
B 81.6
(3)
P 		67.3
(-1.7)
P 		63.5
(-3)
P 		67.4
(-1.7)
P 		80.3
(2.6)
P 		77.4
(1.6)
P 		18
C 89
(3)
P 		73.6
(1)
P 		79.2
(1.7)
P 		42.6
(-3)
P 		57.4
(-1.1)
P 		68.3
(0.3)
P 		46
avr 66.9
(1) 		71.5
(3) 		69
(1.9) 		57.5
(-3) 		60.6
(-1.7) 		65.2
(0.3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176782_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17282
Sequence Type Exemplar sequence
Representative Public ID C46C11.2 NCBI
Target Description C46C11.2 /REP_DB=WormBase Gene ID /WP=CE27860 /GB=AAK68254.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076392(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076392 NCBI Caenorhabditis elegans C46C11.2 (C46C11.2) mRNA, complete cds. 11/11 None
GENEFINDER00000023778 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4632349:4635551:1 9/11 None
C46C11.2 ENSEMBL cdna:known chromosome:CEL140:X:4633027:4635755:1 gene:C46C11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023776 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4633027-4635869(+) 100.0 100.0
Public Domain and Genome References
Ensembl C46C11.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508793 C46C11.2 [Caenorhabditis elegans] gb|AAK68254.1| Hypothetical protein C46C11.2 [Caenorhabditis elegans] 0.0
blast CAE68624 Hypothetical protein CBG14511 [Caenorhabditis briggsae] 0.0
blast AAK93571 SD10674p [Drosophila melanogaster] 3.0E-16
blast AAK93571 SD10674p [Drosophila melanogaster] 4.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508793.1 6 33-50,57-76,91-113,217-234,265-282,289-311
C46C11.2 6 33-50,57-76,91-113,217-234,265-282,289-311
GENEFINDER00000023778 9 21-39,76-93,100-119,134-156,165-184,199-218,289-306,337-354,361-383
Sequence
Target Sequence 
>C. ELEGANS:176782_S_AT
gctccagggagtttacacgggttgcttaatccaatgtcgtatacttttatagcatgtatt
gtagaacaggacgagataggaaaagcatatgcaattagctcggtggcccaaaaactcgcc
ggaatcgcgcaaagtttggttcttcaaaatatttacatagcaacgggtttcgtgtggctt
cttatggcagccatcagtttcgtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCCAGGGAGTTTACACGGGTTGC 155 297 964 Antisense
GAGTTTACACGGGTTGCTTAATCCA 300 397 972 Antisense
GGGTTGCTTAATCCAATGTCGTATA 56 497 982 Antisense
AATGTCGTATACTTTTATAGCATGT 576 163 996 Antisense
GCATATGCAATTAGCTCGGTGGCCC 428 307 1048 Antisense
TAGCTCGGTGGCCCAAAAACTCGCC 217 651 1059 Antisense
AAAACTCGCCGGAATCGCGCAAAGT 188 131 1074 Antisense
GAATCGCGCAAAGTTTGGTTCTTCA 58 329 1085 Antisense
GGTTCTTCAAAATATTTACATAGCA 84 507 1101 Antisense
GTTTCGTGTGGCTTCTTATGGCAGC 467 449 1130 Antisense
CTTATGGCAGCCATCAGTTTCGTCG 566 221 1144 Antisense
Sequence Source Affymetrix Proprietary Database