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[176781_at]

Description C46C11.2 /REP_DB=WormBase Gene ID /WP=CE27860 /GB=AAK68254.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 0      6grp_total > 08      4grp_total > 07      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 237.5
(3)
P 		149.9
(-3)
A 		205.9
(0.8)
P 		200.7
(0.5)
P 		88
B 261.6
(3)
P 		181.6
(-3)
P 		217.8
(-0.3)
M 		250.5
(2.2)
P 		80
C 193.3
(0.1)
P 		170.4
(-3)
M 		215
(3)
P 		190.7
(-0.3)
P 		45
avr 230.8
(3) 		167.3
(-3) 		212.9
(1.3) 		214
(1.4) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 160.7
(-1.2)
A 		171.1
(0.4)
P 		177
(1.2)
P 		188.7
(3)
P 		148.7
(-3)
P 		157.6
(-1.7)
P 		40
B 170.4
(1.3)
M 		185
(3)
P 		162.1
(0.4)
P 		178.8
(2.3)
P 		132.6
(-3)
P 		158.3
(-0.1)
P 		52
C 268.9
(3)
A 		164.7
(-1.5)
P 		198
(-0.1)
P 		195.6
(-0.2)
P 		130.2
(-3)
P 		197.3
(-0.1)
P 		139
avr 200
(3) 		173.6
(0.5) 		179
(1) 		187.7
(1.8) 		137.2
(-3) 		171.1
(0.2) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 86.5
(3)
P 		32.5
(-2.7)
A 		53.8
(-0.4)
P 		29.4
(-3)
P 		57
B 83.4
(3)
P 		44.9
(-3)
P 		50.5
(-2.1)
M 		53.4
(-1.7)
P 		39
C 64
(1.5)
P 		49
(-0.6)
M 		74.9
(3)
P 		32.2
(-3)
P 		43
avr 78
(3) 		42.1
(-2.4) 		59.7
(0.2) 		38.3
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 29.6
(-3)
A 		60.9
(3)
P 		38.6
(-1.3)
P 		47.8
(0.5)
P 		44.9
(-0.1)
P 		38.4
(-1.3)
P 		31
B 59.3
(2.4)
M 		61.6
(3)
P 		39.4
(-3)
P 		47.4
(-0.8)
P 		53.9
(0.9)
P 		59
(2.3)
P 		22
C 99.7
(3)
A 		50.2
(-1.9)
P 		50.4
(-1.9)
P 		39.3
(-3)
P 		42.1
(-2.7)
P 		66
(-0.3)
P 		60
avr 62.9
(3) 		57.6
(1.4) 		42.8
(-3) 		44.8
(-2.4) 		47
(-1.7) 		54.5
(0.5) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176781_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17282
Sequence Type Exemplar sequence
Representative Public ID C46C11.2 NCBI
Target Description C46C11.2 /REP_DB=WormBase Gene ID /WP=CE27860 /GB=AAK68254.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076392
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076392 NCBI Caenorhabditis elegans C46C11.2 (C46C11.2) mRNA, complete cds. A 
GENEFINDER00000023778 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4632349:4635551:1 None
SNAP00000023776 ENSEMBL cdna:SNAP chromosome:CEL140:X:4635128:4635684:1 None
C46C11.2 ENSEMBL cdna:known chromosome:CEL140:X:4633027:4635755:1 gene:C46C11.2 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4633027-4635869(+) 100.0 100.0
Public Domain and Genome References
Ensembl C46C11.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508793 C46C11.2 [Caenorhabditis elegans] gb|AAK68254.1| Hypothetical protein C46C11.2 [Caenorhabditis elegans] 0.0
blast CAE68624 Hypothetical protein CBG14511 [Caenorhabditis briggsae] 0.0
blast NP_508793 C46C11.2 [Caenorhabditis elegans] gb|AAK68254.1| Hypothetical protein C46C11.2 [Caenorhabditis elegans] 2.0E-19
blast CAE68624 Hypothetical protein CBG14511 [Caenorhabditis briggsae] 3.0E-17
blast AAK93571 SD10674p [Drosophila melanogaster] 3.0E-16
blast AAK93571 SD10674p [Drosophila melanogaster] 4.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508793.1 6 33-50,57-76,91-113,217-234,265-282,289-311
C46C11.2 6 33-50,57-76,91-113,217-234,265-282,289-311
GENEFINDER00000023778 9 21-39,76-93,100-119,134-156,165-184,199-218,289-306,337-354,361-383
SNAP00000023776 2 5-27,47-69
Sequence
Target Sequence 
>C. ELEGANS:176781_AT
agaaaggtcttctgggcacctacgtgagattaccccctttcacgtgggacacgtccacat
atgctgactacaaatcctggcgaccaatagttcaaattgtgggtatggctgttggtatgt
tatttttcaaacgaatctttcatttccgcgacaccttcataatctgccttgccattttga
gcatgaccggatgtgtgctcatgattggattggctcaggcctcatggttgatatttgcaa
gtttggctccagggagtttacacgggttgcttaatccaatgtcgtatacttttatagcat
gtattgtagaacaggacgagataggaaaagcatatgcaattagctcggtggcccaaaaac
tcgccggaatcgcgcaaagtttggttcttcaaaatatttacatagcaacgggtttcgtgt
ggcttcttatggcagccatcagtttcgtcgctaaagagatgatttggaaatgcgagactc
agacatggcgacatattgacctcagaacgcacgaggcccgagaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAAGGTCTTCTGGGCACCTACGT 682 65 719 Antisense
CTACGTGAGATTACCCCCTTTCACG 602 223 738 Antisense
TGGGACACGTCCACATATGCTGACT 662 553 763 Antisense
TATGCTGACTACAAATCCTGGCGAC 386 655 778 Antisense
AAACGAATCTTTCATTTCCGCGACA 59 127 847 Antisense
TCATAATCTGCCTTGCCATTTTGAG 489 619 875 Antisense
GACCGGATGTGTGCTCATGATTGGA 382 383 903 Antisense
GATTGGCTCAGGCCTCATGGTTGAT 317 435 926 Antisense
CATAGCAACGGGTTTCGTGTGGCTT 425 209 1119 Antisense
TGCGAGACTCAGACATGGCGACATA 625 579 1189 Antisense
TCAGAACGCACGAGGCCCGAGAAAA 263 619 1220 Antisense
Sequence Source Affymetrix Proprietary Database