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[176780_at]

Description H06I04.1 /REP_DB=WormBase Gene ID /WP=CE23793 /GB=AAF39866.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 98.9
(-0.4)
P 		35.3
(-2.6)
A 		25.2
(-3)
A 		194
(3)
A 		169
B 109.6
(3)
P 		22
(-3)
A 		26.6
(-2.7)
A 		75
(0.6)
P 		88
C 122.4
(3)
P 		42.6
(-2.3)
A 		31.3
(-3)
A 		82.8
(0.4)
A 		91
avr 110.3
(2.5) 		33.3
(-2.6) 		27.7
(-3) 		117.3
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 91.8
(2.5)
A 		93
(2.6)
M 		48.3
(-3)
A 		71.5
(-0.1)
A 		81.2
(1.1)
A 		96
(3)
A 		48
B 101.4
(0.7)
P 		140.9
(3)
A 		43.6
(-2.6)
A 		36.6
(-3)
A 		77
(-0.7)
M 		69.1
(-1.1)
P 		104
C 80
(-0.1)
M 		131.5
(3)
A 		82
(0)
A 		31.9
(-3)
A 		73.9
(-0.5)
A 		95.8
(0.8)
P 		100
avr 91.1
(0.5) 		121.8
(3) 		58
(-2.1) 		46.7
(-3) 		77.4
(-0.5) 		87
(0.2) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 36
(3)
P 		7.7
(-2.8)
A 		6.6
(-3)
A 		28.4
(1.4)
A 		29
B 34.9
(3)
P 		5.4
(-3)
A 		6.2
(-2.8)
A 		16
(-0.8)
P 		30
C 40.5
(3)
P 		12.3
(-2.7)
A 		10.9
(-3)
A 		14
(-2.4)
A 		30
avr 37.1
(3) 		8.5
(-2.9) 		7.9
(-3) 		19.5
(-0.6) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 16.9
(-1.3)
A 		33.1
(3)
M 		10.5
(-3)
A 		18.1
(-1)
A 		24.5
(0.7)
A 		23.4
(0.4)
A 		23
B 35.3
(1.1)
P 		46.9
(3)
A 		10.6
(-2.9)
A 		9.7
(-3)
A 		31.3
(0.5)
M 		25.8
(-0.4)
P 		37
C 29.6
(1.1)
M 		40.1
(3)
A 		20.9
(-0.4)
A 		6.4
(-3)
A 		23.9
(0.1)
A 		32.1
(1.6)
P 		34
avr 27.3
(0.3) 		40
(3) 		14
(-2.5) 		11.4
(-3) 		26.6
(0.2) 		27.1
(0.3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176780_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6866
Sequence Type Exemplar sequence
Representative Public ID H06I04.1 NCBI
Target Description H06I04.1 /REP_DB=WormBase Gene ID /WP=CE23793 /GB=AAF39866.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171090(11), NM_171091(11), NM_171092(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171090 NCBI Caenorhabditis elegans H06I04.1a (H06I04.1) mRNA, complete cds. 11/11 A 
NM_171091 NCBI Caenorhabditis elegans H06I04.1b (H06I04.1) mRNA, complete cds. 11/11 None
NM_171092 NCBI Caenorhabditis elegans H06I04.1c (H06I04.1) mRNA, complete cds. 11/11 None
GENEFINDER00000025129 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3088179:3100109:1 11/11 None
H06I04.1a.1 ENSEMBL cdna:known chromosome:CEL140:III:3091837:3100458:1 gene:H06I04.1 11/11 None
H06I04.1a.2 ENSEMBL cdna:known chromosome:CEL140:III:3091840:3100458:1 gene:H06I04.1 11/11 None
H06I04.1b ENSEMBL cdna:known chromosome:CEL140:III:3091862:3100428:1 gene:H06I04.1 11/11 A 
H06I04.1c.1 ENSEMBL cdna:known chromosome:CEL140:III:3094832:3099996:1 gene:H06I04.1 11/11 None
H06I04.1c.2 ENSEMBL cdna:known chromosome:CEL140:III:3097436:3099996:1 gene:H06I04.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3091861-3100303(+) 97.09 100.0
Public Domain and Genome References
Ensembl H06I04.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39866 Hypothetical protein H06I04.1a [Caenorhabditis elegans] ref|NP_741103.1| H06I04.1a [Caenorhabditis elegans] 0.0
blast AAM48540 Hypothetical protein H06I04.1b [Caenorhabditis elegans] ref|NP_741104.1| H06I04.1b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002994 EMBL-EBI Surf1 protein 3.3E-50
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000025129 1 56-78
Sequence
Target Sequence 
>C. ELEGANS:176780_AT
ttgagaagtcgcgagcactctccagacaacaaattcccaatgatttgttggaaaaaacgc
ggaaaatcgatttttccgaagctaaaaatgctaaaaatcaagatctaatcgataagctca
ttgacgaaaacgaaaatcttcaaatttccctgaatcgagagcaaaaaatgacgtcatcac
tgcaagatgacctggaaaagagccgacggatggttattgatcgggatgagcacattgagg
agcttaagatgaaacttgggaaggctgaaacgaaagcttctcagtgtgagtcggatctga
ctcagacgagctcggatttggcgatggaacggttgagatgtgaagtgctgactggggagc
ttcacgaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAGAAGTCGCGAGCACTCTCCAG 42 707 809 Antisense
CACTCTCCAGACAACAAATTCCCAA 79 199 824 Antisense
CAAATTTCCCTGAATCGAGAGCAAA 63 195 949 Antisense
ATGACCTGGAAAAGAGCCGACGGAT 345 45 995 Antisense
AAGAGCCGACGGATGGTTATTGATC 126 153 1006 Antisense
GATCGGGATGAGCACATTGAGGAGC 706 417 1027 Antisense
GAAACGAAAGCTTCTCAGTGTGAGT 651 357 1075 Antisense
GATCTGACTCAGACGAGCTCGGATT 520 417 1102 Antisense
GAGCTCGGATTTGGCGATGGAACGG 584 385 1116 Antisense
GGTTGAGATGTGAAGTGCTGACTGG 394 507 1139 Antisense
TGCTGACTGGGGAGCTTCACGAAAT 378 581 1154 Antisense
Sequence Source Affymetrix Proprietary Database