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[176779_s_at]

Description C03F11.4 /REP_DB=WormBase Gene ID /WP=CE27052 /GB=AAK18885.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 07      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 30.5
(3)
A 		10
(-3)
A 		22.9
(0.8)
A 		14.4
(-1.7)
A 		21
B 38.3
(3)
A 		13.3
(-3)
A 		36.9
(2.7)
A 		26.5
(0.2)
M 		25
C 28.7
(-1.2)
A 		25.8
(-2.3)
A 		23.8
(-3)
P 		40.4
(3)
P 		17
avr 32.5
(3) 		16.4
(-3) 		27.9
(1.3) 		27.1
(1) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 54.7
(3)
A 		29
(-0.4)
P 		49.8
(2.4)
P 		40.1
(1.1)
A 		28.4
(-0.5)
A 		9.2
(-3)
A 		46
B 29.1
(-1.5)
A 		45.2
(1.4)
P 		43.5
(1.1)
P 		44.1
(1.2)
A 		53.9
(3)
P 		21
(-3)
A 		33
C 45.4
(1.7)
A 		31.1
(-0.9)
P 		52.6
(3)
P 		46.3
(1.9)
P 		39.7
(0.7)
P 		19.1
(-3)
A 		34
avr 43.1
(2) 		35.1
(0.5) 		48.6
(3) 		43.5
(2) 		40.7
(1.5) 		16.4
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 11.1
(3)
A 		2.2
(-2.9)
A 		6
(-0.4)
A 		2.1
(-3)
A 		9
B 12.2
(3)
A 		3.3
(-3)
A 		8.5
(0.5)
A 		5.6
(-1.4)
M 		9
C 9.5
(3)
A 		7.4
(-1.7)
A 		8.3
(0.3)
P 		6.8
(-3)
P 		3
avr 10.9
(3) 		4.3
(-3) 		7.6
(-0) 		4.8
(-2.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 10.1
(2.5)
A 		10.3
(2.7)
P 		10.8
(3)
P 		10.2
(2.6)
A 		8.6
(1.5)
A 		2.2
(-3)
A 		9
B 10.1
(-2)
A 		15.1
(0.1)
P 		10.6
(-1.8)
P 		11.7
(-1.3)
A 		21.9
(3)
P 		7.8
(-3)
A 		14
C 16.8
(3)
A 		9.5
(-1.2)
P 		13.4
(1)
P 		9.3
(-1.3)
P 		12.8
(0.7)
P 		6.4
(-3)
A 		10
avr 12.3
(1.6) 		11.6
(1.1) 		11.6
(1.1) 		10.4
(0.3) 		14.4
(3) 		5.5
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176779_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16476
Sequence Type Exemplar sequence
Representative Public ID C03F11.4 NCBI
Target Description C03F11.4 /REP_DB=WormBase Gene ID /WP=CE27052 /GB=AAK18885.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076519(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076519 NCBI Caenorhabditis elegans C03F11.4 (C03F11.4) mRNA, complete cds. 11/11 None
SNAP00000029106 ENSEMBL cdna:SNAP chromosome:CEL140:X:5404755:5406131:-1 11/11 None
C03F11.4.1 ENSEMBL cdna:known chromosome:CEL140:X:5401450:5406408:-1 gene:C03F11.4 11/11 A 
C03F11.4.2 ENSEMBL cdna:known chromosome:CEL140:X:5401450:5406408:-1 gene:C03F11.4 11/11 A 
C03F11.4.3 ENSEMBL cdna:known chromosome:CEL140:X:5401450:5406408:-1 gene:C03F11.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5403107-5409212(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03F11.4
Entrez Gene 180813 Entrez gene
SwissProt Q11125 EMBL-EBI
WormBase CE33553 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508920 C03F11.4 [Caenorhabditis elegans] sp|Q11125|YX14_CAEEL Hypothetical protein C03F11.4 in chromosome X 0.0
blast T15397 hypothetical protein C03F11.4 - Caenorhabditis elegans 1.0E-133
blast AAK18885 Hypothetical protein C03F11.4 [Caenorhabditis elegans] 1.0E-133
Sequence
Target Sequence 
>C. ELEGANS:176779_S_AT
gagagaaagcttccacctgaaattaaacaattggacgaagacttggaatattatgttgag
aactcaaaattttaccttcgaatcaatttgagagataggtatttggaaacaagagttgat
gaaattagcgagaaatatattggtcctgcgttggaacacaaaactgagctgttgaaaatt
tacgaggatctcattaaacgcagtctgcaggcattcagactgtttatgtttttgaaaaca
ttgaacgaaaaatctgttgactatactaaattcgaagtgttaacactatcttttgttatg
aaagggttcgaggatgattggttggaagttaatggaacctatgaagaaaacgagtcatat
ttatctttcgagaagaatattctacacgatattcccgaaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGAAAGCTTCCACCTGAAATTA 392 393 2374 Antisense
ATTTTACCTTCGAATCAATTTGAGA 221 13 2442 Antisense
GCGAGAAATATATTGGTCCTGCGTT 365 287 2501 Antisense
GGTCCTGCGTTGGAACACAAAACTG 377 501 2515 Antisense
GAGGATCTCATTAAACGCAGTCTGC 579 403 2557 Antisense
TAAACGCAGTCTGCAGGCATTCAGA 268 639 2568 Antisense
GCAGGCATTCAGACTGTTTATGTTT 400 311 2580 Antisense
AAATCTGTTGACTATACTAAATTCG 547 113 2623 Antisense
AAGGGTTCGAGGATGATTGGTTGGA 155 121 2675 Antisense
AAACGAGTCATATTTATCTTTCGAG 275 127 2721 Antisense
TATTCTACACGATATTCCCGAAACA 532 663 2751 Antisense
Sequence Source Affymetrix Proprietary Database