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[176777_at]

Description D1007.16 /REP_DB=WormBase Gene ID /WP=CE23617 /GB=AAK18920.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 96      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 93      6grp_total > 96      4grp_total > 09      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 248.2
(-1.9)
P 		206.7
(-3)
P 		259.4
(-1.6)
P 		437.3
(3)
P 		231
B 241
(-2.7)
P 		324.5
(2.9)
P 		326.5
(3)
P 		236.2
(-3)
P 		90
C 274.8
(-0.3)
P 		270.5
(-0.5)
P 		209.6
(-3)
P 		353.3
(3)
P 		144
avr 254.7
(-3) 		267.2
(-2.1) 		265.2
(-2.3) 		342.3
(3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 414
1 2 3 4 5 6 range
A 207.1
(-3)
P 		227.9
(-2.6)
P 		325.9
(-0.9)
P 		441.1
(1.2)
P 		460
(1.5)
P 		543.4
(3)
P 		336
B 301.2
(-1.6)
P 		205.2
(-3)
P 		295.4
(-1.7)
P 		360
(-0.8)
P 		522.7
(1.6)
P 		619.4
(3)
P 		414
C 207.5
(-3)
P 		246.7
(-2.3)
P 		283.1
(-1.6)
P 		384.9
(0.2)
P 		357.4
(-0.3)
P 		535.4
(3)
P 		328
avr 238.6
(-2.8) 		226.6
(-3) 		301.5
(-1.7) 		395.3
(-0) 		446.7
(0.9) 		566.1
(3) 		340
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 90.4
(3)
P 		44.9
(-3)
P 		67.8
(0)
P 		64
(-0.5)
P 		46
B 76.9
(2.4)
P 		80.1
(3)
P 		75.6
(2.1)
P 		50.3
(-3)
P 		30
C 91
(3)
P 		77.8
(0.5)
P 		73.1
(-0.4)
P 		59.6
(-3)
P 		31
avr 86.1
(3) 		67.6
(-1) 		72.2
(0) 		58
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 38.2
(-3)
P 		81.1
(-0.4)
P 		71
(-1)
P 		111.9
(1.4)
P 		138.8
(3)
P 		132.3
(2.6)
P 		101
B 104.8
(-1.7)
P 		68.3
(-3)
P 		71.7
(-2.9)
P 		95.3
(-2)
P 		212.4
(2.3)
P 		231
(3)
P 		163
C 76.9
(-2.7)
P 		75.3
(-2.8)
P 		72.1
(-3)
P 		77.4
(-2.7)
P 		115.7
(-0.6)
P 		179.2
(3)
P 		107
avr 73.3
(-2.9) 		74.9
(-2.8) 		71.6
(-3) 		94.9
(-1.7) 		155.6
(1.6) 		180.8
(3) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176777_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2536
Sequence Type Exemplar sequence
Representative Public ID D1007.16 NCBI
Target Description D1007.16 /REP_DB=WormBase Gene ID /WP=CE23617 /GB=AAK18920.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059003(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059003 NCBI Caenorhabditis elegans D1007.16 (D1007.16) mRNA, complete cds. 11/11 None
SNAP00000011286 ENSEMBL cdna:SNAP chromosome:CEL140:I:4603224:4604057:1 11/11 None
GENEFINDER00000011311 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4603224:4604057:1 11/11 None
D1007.16 ENSEMBL cdna:known chromosome:CEL140:I:4603518:4604135:1 gene:D1007.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4603517-4604057(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1007.16
Entrez Gene 172065 Entrez gene
SwissProt Q9TXQ9 EMBL-EBI
WormBase CE23617 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18920 Hypothetical protein D1007.16 [Caenorhabditis elegans] ref|NP_491404.1| D1007.16 [Caenorhabditis elegans] 1.0E-78
blast AAK18920 Hypothetical protein D1007.16 [Caenorhabditis elegans] ref|NP_491404.1| D1007.16 [Caenorhabditis elegans] 3.0E-78
blast CAE74515 Hypothetical protein CBG22269 [Caenorhabditis briggsae] 5.0E-71
blast G87757 protein D1007.8 [imported] - Caenorhabditis elegans 1.0E-60
blast G87757 protein D1007.8 [imported] - Caenorhabditis elegans 3.0E-60
Sequence
Target Sequence 
>C. ELEGANS:176777_AT
gaatgtcttctgttcttcgacaaaaagaccaacacagttcgcttggagaaaattacgagc
aatattaatgtaaaaaagacgagagatctagatcaaggaacagaactcgcattgaaacgt
ggaatcgaaagattgagaacttcttctaataatcagcgatctggaccatcttcaccggag
gagaaagcgaaaattcagaaacaaatgcagagagatacatcagattcgagtagtgattct
gatggatcatctgattccgacaaatcgaatggcgattccagtgatgatgaagatgagagc
gagaagatattattggaagaaatgaaaaagcccaaaccatatacagaaagagaacccgca
ccgccttcgtcttcaaatacctacaatcacaaagaaagccacgtggctccctatatatca
agta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGTCTTCTGTTCTTCGACAAAA 14 333 55 Antisense
AAGACCAACACAGTTCGCTTGGAGA 687 153 79 Antisense
GAACTCGCATTGAAACGTGGAATCG 580 347 157 Antisense
ACTTCTTCTAATAATCAGCGATCTG 646 103 193 Antisense
AATCAGCGATCTGGACCATCTTCAC 182 171 205 Antisense
GGATCATCTGATTCCGACAAATCGA 43 513 298 Antisense
GAAAAAGCCCAAACCATATACAGAA 178 355 378 Antisense
TATACAGAAAGAGAACCCGCACCGC 31 653 394 Antisense
GCCTTCGTCTTCAAATACCTACAAT 567 271 417 Antisense
AAGAAAGCCACGTGGCTCCCTATAT 213 151 446 Antisense
CACGTGGCTCCCTATATATCAAGTA 439 199 454 Antisense
Sequence Source Affymetrix Proprietary Database