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[176776_at]

Description Y92C3A.1 /REP_DB=WormBase Gene ID /WP=CE27338 /GB=AAK31572.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 3.3
(-3)
A 		205.9
(3)
A 		179.6
(2.2)
A 		4.1
(-3)
A 		203
B 8.6
(-3)
A 		255.6
(3)
A 		181.8
(1.2)
A 		9.2
(-3)
A 		247
C 8.4
(-3)
A 		253.8
(3)
A 		238.9
(2.6)
P 		9.1
(-3)
A 		245
avr 6.8
(-3) 		238.4
(3) 		200.1
(2) 		7.5
(-3) 		232

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 26.7
(-2.3)
A 		186.8
(3)
P 		76.8
(-0.6)
A 		31.2
(-2.2)
A 		94
(-0.1)
A 		5.6
(-3)
A 		181
B 44.8
(-1)
A 		103.6
(3)
A 		64.6
(0.4)
A 		38.9
(-1.4)
A 		54.4
(-0.3)
A 		15
(-3)
A 		89
C 106.6
(3)
A 		103.9
(2.8)
A 		83.4
(1.6)
A 		9
(-2.9)
A 		64.9
(0.5)
A 		7.7
(-3)
A 		99
avr 59.4
(-0.5) 		131.4
(3) 		74.9
(0.2) 		26.4
(-2.2) 		71.1
(0) 		9.4
(-3) 		122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 1.2
(-2.9)
A 		44.7
(2.7)
A 		46.9
(3)
A 		0.6
(-3)
A 		46
B 2.7
(-2.9)
A 		63.1
(3)
A 		42.1
(0.9)
A 		2
(-3)
A 		61
C 2.8
(-2.9)
A 		73
(2.2)
A 		83.3
(3)
P 		1.5
(-3)
A 		82
avr 2.2
(-2.9) 		60.3
(3) 		57.4
(2.7) 		1.4
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 4.9
(-2.7)
A 		66.4
(3)
P 		16.7
(-1.6)
A 		7.9
(-2.4)
A 		28.4
(-0.5)
A 		1.4
(-3)
A 		65
B 15.6
(-0.9)
A 		34.5
(3)
A 		15.7
(-0.9)
A 		10.3
(-2)
A 		22.1
(0.4)
A 		5.6
(-3)
A 		29
C 39.5
(3)
A 		31.7
(1.8)
A 		21.2
(0.1)
A 		1.8
(-3)
A 		21
(0.1)
A 		2.6
(-2.9)
A 		38
avr 20
(-0.5) 		44.2
(3) 		17.9
(-0.8) 		6.7
(-2.5) 		23.8
(0) 		3.2
(-3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176776_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8337
Sequence Type Exemplar sequence
Representative Public ID Y92C3A.1 NCBI
Target Description Y92C3A.1 /REP_DB=WormBase Gene ID /WP=CE27338 /GB=AAK31572.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064939(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064939 NCBI Caenorhabditis elegans Y71D11A.1 (Y71D11A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000001519 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1163903:1174150:1 11/11 None
SNAP00000001515 ENSEMBL cdna:SNAP chromosome:CEL140:III:1163945:1173448:1 11/11 None
Y71D11A.1 ENSEMBL cdna:known chromosome:CEL140:III:1152032:1180880:1 gene:Y71D11A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1163902-1173448(+) 95.77 99.01
Public Domain and Genome References
Gene Title
Ensembl Y71D11A.1
Entrez Gene 190583 Entrez gene
WormBase CE38125 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
7156 homophilic cell adhesion inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
30288 periplasmic space (sensu Gram-negative Bacteria) inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_497340 Y71D11A.1 [Caenorhabditis elegans] 0.0
blast CAE66457 Hypothetical protein CBG11734 [Caenorhabditis briggsae] 0.0
blast ABA00154 Hypothetical protein Y71D11A.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002126 EMBL-EBI Cadherin 5.2E-5
Pfam IPR002126 EMBL-EBI Cadherin 3.2E-21
Pfam IPR002126 EMBL-EBI Cadherin 2.5E-6
Pfam IPR002126 EMBL-EBI Cadherin 1.3E-6
Pfam IPR002126 EMBL-EBI Cadherin 8.8E-14
Pfam IPR002126 EMBL-EBI Cadherin 2.5E-4
Pfam IPR002126 EMBL-EBI Cadherin 5.2E-5
Pfam IPR002126 EMBL-EBI Cadherin 3.2E-21
Pfam IPR002126 EMBL-EBI Cadherin 2.5E-6
Pfam IPR002126 EMBL-EBI Cadherin 1.3E-6
Pfam IPR002126 EMBL-EBI Cadherin 8.8E-14
Pfam IPR002126 EMBL-EBI Cadherin 2.5E-4
Pfam IPR002126 EMBL-EBI Cadherin 6.8E-9
Pfam IPR002126 EMBL-EBI Cadherin 5.2E-5
Pfam IPR002126 EMBL-EBI Cadherin 3.2E-21
Pfam IPR002126 EMBL-EBI Cadherin 2.5E-6
Pfam IPR002126 EMBL-EBI Cadherin 1.3E-6
Pfam IPR002126 EMBL-EBI Cadherin 8.8E-14
Pfam IPR002126 EMBL-EBI Cadherin 2.5E-4
Pfam IPR002126 EMBL-EBI Cadherin 1.8E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497340.2 1 2774-2796
Y71D11A.1 1 2774-2796
Sequence
Target Sequence 
>C. ELEGANS:176776_AT
gctgttggcatctccaggactatgcatctaggcagcccgatttatcagttaaaggctgtg
gatcttgataaattccctgataaccaggtcacctactccttgaattctccatggatctct
atagattcccgggaaggattgctccgagtcaacggagatcttcaggcagcccccgaatcg
ttggatctaaccgtggaagctcaggactctggcaagccaccgctcaaatcggagactcac
ctgagaatcctgatcttcaagcagaacatcccaaagttcctggaaaccccgcttgaagtc
acgcaaatcccaacaaaaatggctccaggagcacacatcaagaccctgctggcaggaccg
actgtctcggagcaggatacaattctctatcggctcgtggacaccgtcaatgggctattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGTTGGCATCTCCAGGACTATGC 179 295 3850 Antisense
CAGGACTATGCATCTAGGCAGCCCG 392 209 3864 Antisense
ACCTACTCCTTGAATTCTCCATGGA 382 87 3940 Antisense
TTCCCGGGAAGGATTGCTCCGAGTC 515 291 3975 Antisense
GAGTCAACGGAGATCTTCAGGCAGC 436 395 3995 Antisense
AACCGTGGAAGCTCAGGACTCTGGC 227 147 4038 Antisense
GCCACCGCTCAAATCGGAGACTCAC 366 279 4065 Antisense
GACTCACCTGAGAATCCTGATCTTC 541 373 4083 Antisense
CAAGACCCTGCTGGCAGGACCGACT 247 185 4188 Antisense
AGGATACAATTCTCTATCGGCTCGT 658 55 4223 Antisense
CGTGGACACCGTCAATGGGCTATTC 260 241 4245 Antisense
Sequence Source Affymetrix Proprietary Database