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[176774_at]

Description Y50D7A.4 /REP_DB=WormBase Gene ID /WP=CE26141 /GB=AAK68511.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 38      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 28.7
(3)
A 		24.9
(1.9)
A 		8.1
(-3)
A 		11.8
(-1.9)
A 		21
B 28.7
(3)
A 		10.3
(-1.7)
A 		7.1
(-2.5)
A 		5.2
(-3)
A 		24
C 35.1
(3)
A 		8.4
(-2.5)
A 		5.9
(-3)
A 		20
(-0.1)
A 		29
avr 30.8
(3) 		14.5
(-1.1) 		7
(-3) 		12.3
(-1.7) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 9.4
(-2)
A 		5
(-3)
A 		7.5
(-2.5)
A 		12.7
(-1.3)
A 		7
(-2.6)
A 		32.6
(3)
A 		28
B 20.3
(3)
A 		5.7
(-2.2)
A 		3.3
(-3)
A 		9.1
(-1)
A 		4.8
(-2.5)
A 		3.8
(-2.8)
A 		17
C 10
(3)
A 		6.9
(-1.1)
A 		8.5
(1)
A 		8.9
(1.5)
A 		6.5
(-1.7)
A 		5.5
(-3)
A 		5
avr 13.2
(2.4) 		5.9
(-3) 		6.4
(-2.6) 		10.2
(0.2) 		6.1
(-2.9) 		14
(3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 10.4
(3)
A 		5.4
(-0.4)
A 		2.1
(-2.7)
A 		1.7
(-3)
A 		9
B 9.2
(3)
A 		2.6
(-1.9)
A 		1.6
(-2.6)
A 		1.1
(-3)
A 		8
C 11.6
(3)
A 		2.4
(-2.8)
A 		2.1
(-3)
A 		3.4
(-2.2)
A 		10
avr 10.4
(3) 		3.5
(-1.9) 		1.9
(-3) 		2.1
(-2.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.7
(-2.9)
A 		1.8
(-2.8)
A 		1.6
(-3)
A 		3.2
(-1.5)
A 		2.1
(-2.5)
A 		7.9
(3)
A 		6
B 7.1
(3)
A 		1.9
(-2)
A 		0.8
(-3)
A 		2.4
(-1.5)
A 		2
(-1.9)
A 		1.4
(-2.4)
A 		6
C 3.7
(3)
A 		2.1
(-2.1)
A 		2.2
(-1.7)
A 		1.8
(-3)
A 		2.1
(-2.1)
A 		1.8
(-3)
A 		2
avr 4.2
(3) 		1.9
(-2.1) 		1.5
(-3) 		2.5
(-0.8) 		2.1
(-1.7) 		3.7
(1.9) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176774_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8346
Sequence Type Exemplar sequence
Representative Public ID Y50D7A.4 NCBI
Target Description Y50D7A.4 /REP_DB=WormBase Gene ID /WP=CE26141 /GB=AAK68511.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064779(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064779 NCBI Caenorhabditis elegans Y50D7A.4 (Y50D7A.4) mRNA, complete cds. 10/11 None
GENEFINDER00000021195 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:237760:253375:1 10/11 None
Y50D7A.4.2 ENSEMBL cdna:known chromosome:CEL140:III:235841:253375:1 gene:Y50D7A.4 10/11 None
Y50D7A.4.1 ENSEMBL cdna:known chromosome:CEL140:III:235843:253375:1 gene:Y50D7A.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021187 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:237759-253375(+) 99.92 100.0
Public Domain and Genome References
Gene Title
Ensembl Y50D7A.4
Entrez Gene 175189 Entrez gene
SwissProt Q8WTL6 EMBL-EBI
WormBase CE35099 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260282_AT acetyltransferase-related at
CANINE:1587860_AT similar to NMDA receptor regulated 1 cfa
CANINE_2:CFA.1585.1.A1_S_AT similar to NMDA receptor regulated 1 cfa
CANINE_2:CFA.1585.2.S1_S_AT similar to NMDA receptor regulated 1 cfa
CANINE_2:CFA.9193.1.A1_S_AT similar to NMDA receptor regulated 1 cfa
CANINE_2:CFAAFFX.6534.1.S1_AT similar to NMDA receptor regulated 1 cfa
DROSOPHILA_2:1637169_AT dm
DROSGENOME1:141774_AT dm
CHICKEN:GGA.16591.1.S1_AT NMDA receptor regulated 1 gga
HG-U133_PLUS_2:222837_S_AT NMDA receptor regulated 1 hs
HG-U133B:222837_S_AT NMDA receptor regulated 1 hs
HG-U133B:222836_AT NMDA receptor regulated 1 hs
HG-U133_PLUS_2:222836_AT NMDA receptor regulated 1 hs
HG-U133_PLUS_2:219158_S_AT NMDA receptor regulated 1 hs
HG-U133A:219158_S_AT NMDA receptor regulated 1 hs
HG-U133A_2:219158_S_AT NMDA receptor regulated 1 hs
HU35KSUBA:H11788_AT NMDA receptor regulated 1 hs
HU35KSUBD:RC_N91948_AT NMDA receptor regulated 1 hs
HG-U133_PLUS_2:226998_AT NMDA receptor regulated 1 hs
HG-U133B:226998_AT NMDA receptor regulated 1 hs
U133_X3P:G13376639_3P_A_AT NMDA receptor regulated 1 hs
U133_X3P:G13195459_3P_AT NMDA receptor regulated 1 hs
U133_X3P:HS.125034.1.S1_3P_AT NMDA receptor regulated 1 hs
HG-U95B:47461_AT NMDA receptor regulated 1 hs
HG-U95C:61849_AT NMDA receptor regulated 1 hs
HG-U95E:81236_AT NMDA receptor regulated 1 hs
HG-U95D:89287_AT NMDA receptor regulated 1 hs
U133_X3P:HS2.118421.1.S1_3P_S_AT NMDA receptor regulated 1 hs
HG-U133_PLUS_2:1556381_AT NMDA receptor regulated 1 hs
HG-U133_PLUS_2:1556382_A_AT NMDA receptor regulated 1 hs
HG-U95D:76055_AT NMDA receptor regulated 1 hs
HG-U95D:73833_AT NMDA receptor regulated 1 hs
MG-U74AV2:96152_AT NMDA receptor-regulated gene 1 mm
MU11KSUBA:AA266365_S_AT NMDA receptor-regulated gene 1 mm
MU11KSUBA:AA671586_AT NMDA receptor-regulated gene 1 mm
MU11KSUBA:AA105104_G_AT NMDA receptor-regulated gene 1 mm
MU11KSUBA:AA105104_AT NMDA receptor-regulated gene 1 mm
MG-U74AV2:93246_AT NMDA receptor-regulated gene 1 mm
MG-U74AV2:103791_AT NMDA receptor-regulated gene 1 mm
MG-U74BV2:112103_AT NMDA receptor-regulated gene 1 mm
MG-U74BV2:164068_AT NMDA receptor-regulated gene 1 mm
MG-U74CV2:170383_AT NMDA receptor-regulated gene 1 mm
MOE430A:1418022_AT NMDA receptor-regulated gene 1 mm
MOUSE430A_2:1418022_AT NMDA receptor-regulated gene 1 mm
MOUSE430_2:1418022_AT NMDA receptor-regulated gene 1 mm
MOE430A:1418024_AT NMDA receptor-regulated gene 1 mm
MOUSE430A_2:1418024_AT NMDA receptor-regulated gene 1 mm
MOUSE430_2:1418024_AT NMDA receptor-regulated gene 1 mm
MOE430A:1418023_AT NMDA receptor-regulated gene 1 mm
MOUSE430A_2:1418023_AT NMDA receptor-regulated gene 1 mm
MOUSE430_2:1418023_AT NMDA receptor-regulated gene 1 mm
MOE430A:1435139_AT NMDA receptor-regulated gene 1 mm
MOUSE430A_2:1435139_AT NMDA receptor-regulated gene 1 mm
MOUSE430_2:1435139_AT NMDA receptor-regulated gene 1 mm
MG-U74BV2:115697_AT NMDA receptor-regulated gene 1, mRNA (cDNA clone IMAGE:3674167) mm
MU19KSUBA:TC16077_AT NMDA receptor-regulated gene 1, mRNA (cDNA clone IMAGE:3674167) mm
MU19KSUBB:TC32135_AT NMDA receptor-regulated gene 1, mRNA (cDNA clone IMAGE:3674167) mm
MU19KSUBC:TC42146_AT NMDA receptor-regulated gene 1, mRNA (cDNA clone IMAGE:3674167) mm
RG-U34A:RC_AI177404_AT NMDA receptor-regulated gene 1 (predicted) rn
RG-U34C:RC_AI179519_AT NMDA receptor-regulated gene 1 (predicted) rn
RAE230A:1372558_AT NMDA receptor-regulated gene 1 (predicted) rn
RAT230_2:1372558_AT NMDA receptor-regulated gene 1 (predicted) rn
RAE230B:1377612_AT NMDA receptor-regulated gene 1 (predicted) rn
RAT230_2:1377612_AT NMDA receptor-regulated gene 1 (predicted) rn
RAE230B:1383514_S_AT NMDA receptor-regulated gene 1 (predicted) rn
RAT230_2:1383514_S_AT NMDA receptor-regulated gene 1 (predicted) rn
RAE230B:1393078_AT NMDA receptor-regulated gene 1 (predicted) rn
RAT230_2:1393078_AT NMDA receptor-regulated gene 1 (predicted) rn
RAE230B:1393881_AT NMDA receptor-regulated gene 1 (predicted) rn
RAT230_2:1393881_AT NMDA receptor-regulated gene 1 (predicted) rn
RAE230A:1381204_AT NMDA receptor-regulated gene 1 (predicted) rn
RAT230_2:1381204_AT NMDA receptor-regulated gene 1 (predicted) rn
RG-U34B:RC_AA849957_AT NMDA receptor-regulated gene 1 (predicted) rn
RG-U34A:RC_AI639430_AT NMDA receptor-regulated gene 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK68511 Hypothetical protein Y50D7A.4 [Caenorhabditis elegans] ref|NP_497180.3| Y50D7A.4 [Caenorhabditis elegans] 0.0
blast CAE69502 Hypothetical protein CBG15710 [Caenorhabditis briggsae] 0.0
blast NP_956940 NMDA receptor-regulated gene 1 [Danio rerio] gb|AAH57466.1| NMDA receptor-regulated gene 1 [Danio rerio] 1.0E-172
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 1.6E-5
Pfam IPR001440 EMBL-EBI TPR repeat 0.25
Pfam IPR001440 EMBL-EBI TPR repeat 1.6E-5
Pfam IPR001440 EMBL-EBI TPR repeat 0.25
Sequence
Target Sequence 
>C. ELEGANS:176774_AT
gtaactggatatgctctttgtgcagaagtttatcgtcgaaaaggaaaagttcttctcgca
ttgaaatgtttgaatgaaggagaagatcgtgaaccaactcatccactacttcatgttcaa
aaagtcaaatttctggcttattggccaaaatgcgagctgagcggtttggtgaaggaaaca
gccgacgaactgatgaaatgtgtgtatggagccgaaagagatgccgctgagctcaacgaa
aagttcaaaattgagcatcaacacgattttgctcaccgtttggcttctttagaaacgcaa
aagttctcgaatttctgcaaattttgctggaaaactgcccaaaaactagacgctgaagct
caatattcaatcgattcttcgacaaatttgattagttggattttgaaatcaattgaagat
tcaaaagtgaatggaagaagtctaaaaatgatgattaagcttaaagatggtattgaatat
ggaaaatatggaaaatggtcaaaagatgatatggaaaagctccgtaaacaagtgcatagc
ctgttcccattgtcactggattttggtggaggtgttcaacataaatcggcttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAACTGGATATGCTCTTTGTGCAG 72 463 1840 Antisense
GAAGATCGTGAACCAACTCATCCAC 60 339 1921 Antisense
AACTCATCCACTACTTCATGTTCAA 249 141 1935 Antisense
TGCGAGCTGAGCGGTTTGGTGAAGG 648 581 1990 Antisense
GGAGCCGAAAGAGATGCCGCTGAGC 620 519 2047 Antisense
GCCGCTGAGCTCAACGAAAAGTTCA 466 285 2062 Antisense
GCATCAACACGATTTTGCTCACCGT 498 309 2094 Antisense
AACTGCCCAAAAACTAGACGCTGAA 86 143 2172 Antisense
AAACAAGTGCATAGCCTGTTCCCAT 125 129 2365 Antisense
CCTGTTCCCATTGTCACTGGATTTT 101 267 2379 Antisense
AGGTGTTCAACATAAATCGGCTTCT 488 49 2409 Antisense
Sequence Source Affymetrix Proprietary Database