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[176773_at]

Description F45D11.5 /REP_DB=WormBase Gene ID /WP=CE20802 /GB=AAF39814.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 08      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 2.3
(-3)
A 		20.4
(-0.9)
A 		12.6
(-1.8)
A 		54.2
(3)
A 		52
B 11.3
(-2.6)
A 		10.5
(-2.7)
A 		66.9
(3)
A 		7.5
(-3)
A 		59
C 29.6
(-1.1)
A 		12.7
(-2.7)
A 		9
(-3)
A 		74.3
(3)
A 		65
avr 14.4
(-3) 		14.5
(-3) 		29.5
(-0.1) 		45.3
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 21.5
(-1.3)
A 		14.8
(-3)
A 		20.4
(-1.6)
A 		27.1
(0.1)
A 		38.9
(3)
A 		26.8
(-0)
A 		24
B 13
(-2.1)
A 		7.9
(-3)
A 		7.7
(-3)
A 		15.9
(-1.7)
A 		8.2
(-2.9)
A 		44.4
(3)
A 		37
C 13.8
(-2.7)
A 		51.1
(1.6)
A 		11.3
(-3)
A 		15.6
(-2.5)
A 		16.2
(-2.4)
A 		62.8
(3)
A 		52
avr 16.1
(-2.4) 		24.6
(-0.8) 		13.1
(-3) 		19.5
(-1.8) 		21.1
(-1.5) 		44.7
(3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 0.8
(-3)
A 		4.4
(0)
A 		3.3
(-0.9)
A 		7.9
(3)
A 		7
B 3.6
(-2.1)
A 		2.6
(-2.6)
A 		15.5
(3)
A 		1.6
(-3)
A 		14
C 9.8
(1.3)
A 		3.7
(-2.7)
A 		3.2
(-3)
A 		12.5
(3)
A 		9
avr 4.7
(-1.2) 		3.6
(-3) 		7.3
(3) 		7.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4
(-3)
A 		5.3
(-2)
A 		4.4
(-2.7)
A 		6.9
(-0.7)
A 		11.7
(3)
A 		6.5
(-1.1)
A 		8
B 4.5
(-1.9)
A 		2.6
(-2.7)
A 		1.9
(-3)
A 		4.2
(-2.1)
A 		3.3
(-2.4)
A 		16.6
(3)
A 		15
C 5.1
(-2.3)
A 		15.6
(1.2)
A 		2.9
(-3)
A 		3.1
(-2.9)
A 		5.3
(-2.2)
A 		21
(3)
A 		18
avr 4.5
(-2.3) 		7.8
(-0.6) 		3.1
(-3) 		4.7
(-2.2) 		6.8
(-1.1) 		14.7
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176773_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5175
Sequence Type Exemplar sequence
Representative Public ID F45D11.5 NCBI
Target Description F45D11.5 /REP_DB=WormBase Gene ID /WP=CE20802 /GB=AAF39814.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061481(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061481 NCBI Caenorhabditis elegans F45D11.5 (F45D11.5) mRNA, complete cds. 11/11 None
SNAP00000019555 ENSEMBL cdna:SNAP chromosome:CEL140:II:1001874:1002443:1 11/11 None
F45D11.5 ENSEMBL cdna:known chromosome:CEL140:II:1001741:1002443:1 gene:F45D11.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000019569 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1001872-1002442(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45D11.5
Entrez Gene 173479 Entrez gene
SwissProt Q8MYD5 EMBL-EBI
WormBase CE35934 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39814 Hypothetical protein F45D11.5 [Caenorhabditis elegans] ref|NP_493882.2| F45D11.5 [Caenorhabditis elegans] 5.0E-73
blast AAF39814 Hypothetical protein F45D11.5 [Caenorhabditis elegans] ref|NP_493882.2| F45D11.5 [Caenorhabditis elegans] 4.0E-36
blast AAB94977 Hypothetical protein F52C6.11 [Caenorhabditis elegans] ref|NP_494125.2| F52C6.11 [Caenorhabditis elegans] 4.0E-27
blast AAF39857 Hypothetical protein F59H6.9 [Caenorhabditis elegans] ref|NP_494156.1| F59H6.9 [Caenorhabditis elegans] 5.0E-27
blast AAF39859 Hypothetical protein F59H6.11 [Caenorhabditis elegans] ref|NP_494158.1| F59H6.11 [Caenorhabditis elegans] 7.0E-21
blast NP_494123 F52C6.9 [Caenorhabditis elegans] 7.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.6E-14
Pfam IPR000210 EMBL-EBI BTB/POZ domain 3.4E-10
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.4E-5
Sequence
Target Sequence 
>C. ELEGANS:176773_AT
tccgcgtgcgcattaattcatcgtcaggcttgccaaaaaaagatcttaagtgcttcgacg
agccggtggaggacctgactgatgtggtgcttattgttgaagatcggaagttccatgtta
ttagaaagttcctggcctcccattcgtcctacttcaagaatcttctgctcggaaacttcc
cagagcccggagagaacaccgttattgggattcatcacctggcagacatgtacgatgtgg
agccagttgtccgaaagtgtgaaaagtttctgatagagaagtcacagctgaccgtcaatg
agaagctccattttgcgatgcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGCGTGCGCATTAATTCATCGTC 592 595 53 Antisense
TAAGTGCTTCGACGAGCCGGTGGAG 115 637 99 Antisense
GGAGGACCTGACTGATGTGGTGCTT 437 511 120 Antisense
TTATTAGAAAGTTCCTGGCCTCCCA 570 677 170 Antisense
TCCCATTCGTCCTACTTCAAGAATC 474 595 190 Antisense
ATCTTCTGCTCGGAAACTTCCCAGA 121 31 212 Antisense
ACTTCCCAGAGCCCGGAGAGAACAC 310 103 227 Antisense
TTGGGATTCATCACCTGGCAGACAT 402 707 257 Antisense
GTACGATGTGGAGCCAGTTGTCCGA 245 459 282 Antisense
GAGAAGTCACAGCTGACCGTCAATG 53 391 328 Antisense
GAGAAGCTCCATTTTGCGATGCAAC 121 393 352 Antisense
Sequence Source Affymetrix Proprietary Database