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[176772_s_at]

Description Y50D7A.5 /REP_DB=WormBase Gene ID /WP=CE26142 /GB=AAK68512.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 02      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 555
1 2 3 4 range
A 94.3
(-2.5)
P 		191.7
(-1.3)
A 		52.9
(-3)
A 		529
(3)
P 		476
B 116
(-2)
P 		24.5
(-3)
A 		129.7
(-1.9)
A 		579.3
(3)
P 		555
C 75.7
(-2.4)
A 		45.3
(-3)
A 		53.4
(-2.9)
A 		370.6
(3)
P 		325
avr 95.3
(-2.8) 		87.2
(-2.9) 		78.7
(-3) 		493
(3) 		414

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 146.3
(2.1)
A 		102.4
(0.1)
A 		35
(-3)
A 		130.9
(1.4)
A 		72
(-1.3)
M 		165.2
(3)
P 		130
B 41.5
(-2.6)
A 		118.5
(0)
P 		28.6
(-3)
A 		43.1
(-2.5)
A 		117.9
(0)
P 		206.2
(3)
P 		178
C 16.9
(-3)
A 		19.3
(-2.9)
A 		130.2
(1.9)
A 		80.6
(-0.3)
A 		141.6
(2.4)
A 		156
(3)
P 		139
avr 68.2
(-2.8) 		80.1
(-2.2) 		64.6
(-3) 		84.9
(-1.9) 		110.5
(-0.5) 		175.8
(3) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 34.3
(-1.1)
P 		41.6
(-0.4)
A 		13.8
(-3)
A 		77.4
(3)
P 		64
B 37
(-1.4)
P 		6.1
(-3)
A 		30.1
(-1.8)
A 		123.5
(3)
P 		117
C 25.1
(-1.5)
A 		13
(-3)
A 		18.6
(-2.3)
A 		62.5
(3)
P 		50
avr 32.1
(-1.9) 		20.2
(-3) 		20.8
(-2.9) 		87.8
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 27
(0.6)
A 		36.4
(2.3)
A 		7.6
(-3)
A 		33.2
(1.7)
A 		21.7
(-0.4)
M 		40.2
(3)
P 		33
B 14.4
(-2.4)
A 		39.5
(-0.2)
P 		6.9
(-3)
A 		11.4
(-2.6)
A 		47.9
(0.5)
P 		76.9
(3)
P 		70
C 6.3
(-2.9)
A 		5.9
(-3)
A 		33.1
(0.5)
A 		16.2
(-1.7)
A 		45.8
(2.2)
A 		52.2
(3)
P 		46
avr 15.9
(-3) 		27.3
(-1.3) 		15.9
(-3) 		20.3
(-2.3) 		38.5
(0.3) 		56.4
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176772_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8248
Sequence Type Exemplar sequence
Representative Public ID Y50D7A.5 NCBI
Target Description Y50D7A.5 /REP_DB=WormBase Gene ID /WP=CE26142 /GB=AAK68512.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064778(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064778 NCBI Caenorhabditis elegans Y50D7A.5 (Y50D7A.5) mRNA, complete cds. 11/11 A 
Y50D7A.5 ENSEMBL cdna:known chromosome:CEL140:III:230434:235051:1 gene:Y50D7A.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000021197 6/11 Cross Hyb Matching Probes None
SNAP00000021186 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:230433-235032(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y50D7A.5
Entrez Gene 175188 Entrez gene
SwissProt Q965T5 EMBL-EBI
WormBase CE26142 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68512 Hypothetical protein Y50D7A.5 [Caenorhabditis elegans] ref|NP_497179.1| Y50D7A.5 [Caenorhabditis elegans] 9.0E-98
blast CAE69511 Hypothetical protein CBG15719 [Caenorhabditis briggsae] 4.0E-67
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497179.1 1 5-27
Y50D7A.5 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:176772_S_AT
ctacaagccaccatccaagagctggctctgaaaaagtacgccgaccacatctgtgatgcc
tccgagttcgcaccgaccattctatccgctgattatcagtacacttgtgtcgagatctgt
cagagctgcatgccgggaagtgccccaatctgcttccaacgcaacccccgcttcacaggc
ctcgcccaagtctgcctttgcacctacaatctggaaaatcccatcgacaacgccgccttc
tcacttcgccacgaaaaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACAAGCCACCATCCAAGAGCTGG 417 227 253 Antisense
AGCCACCATCCAAGAGCTGGCTCTG 17 85 258 Antisense
GAGCTGGCTCTGAAAAAGTACGCCG 250 387 271 Antisense
GAAAAAGTACGCCGACCACATCTGT 125 355 282 Antisense
GACCATTCTATCCGCTGATTATCAG 594 383 327 Antisense
GCTGATTATCAGTACACTTGTGTCG 545 295 340 Antisense
ACTTGTGTCGAGATCTGTCAGAGCT 214 105 355 Antisense
CTGTCAGAGCTGCATGCCGGGAAGT 532 239 369 Antisense
TGCCTTTGCACCTACAATCTGGAAA 608 585 445 Antisense
CTGGAAAATCCCATCGACAACGCCG 525 241 463 Antisense
CCTTCTCACTTCGCCACGAAAAACG 82 269 488 Antisense
Sequence Source Affymetrix Proprietary Database