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[176769_s_at]

Description Y50D7A.7 /REP_DB=WormBase Gene ID /WP=CE26144 /GB=AAK68514.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 47      6grp_total > 18      4grp_total > 0      6grp_highest_sub > De      6grp_cgc > 12      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2002
1 2 3 4 range
A 5235.7
(1.5)
P 		4255.2
(-3)
P 		5557.9
(3)
P 		5059.6
(0.7)
P 		1303
B 3556.1
(-3)
P 		4083.3
(-1)
P 		4200.6
(-0.6)
P 		5152.8
(3)
P 		1597
C 4125.4
(-3)
P 		4145.8
(-2.9)
P 		4812.4
(1.3)
P 		5087.5
(3)
P 		962
avr 4305.7
(-2.1) 		4161.4
(-3) 		4857
(1.4) 		5100
(3) 		939

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3447
1 2 3 4 5 6 range
A 6206.3
(3)
P 		3346.9
(-2.5)
P 		3182.1
(-2.8)
P 		3186.7
(-2.8)
P 		3099.6
(-3)
P 		3694.9
(-1.9)
P 		3107
B 4964
(3)
P 		3179.3
(-2.3)
P 		3191.7
(-2.3)
P 		2950.6
(-3)
P 		3798.1
(-0.5)
P 		4326.5
(1.1)
P 		2013
C 3495.7
(-0.1)
P 		4277
(3)
P 		3442.1
(-0.3)
P 		3465.2
(-0.2)
P 		3460.3
(-0.2)
P 		2759.7
(-3)
P 		1517
avr 4888.7
(3) 		3601.1
(-1.6) 		3272
(-2.7) 		3200.8
(-3) 		3452.7
(-2.1) 		3593.7
(-1.6) 		1688
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1166
1 2 3 4 range
A 1906.3
(3)
P 		923.7
(-2.1)
P 		1452.9
(0.7)
P 		740.6
(-3)
P 		1166
B 1134
(3)
P 		1008.5
(-1.7)
P 		973.4
(-3)
P 		1098.1
(1.7)
P 		161
C 1365.6
(0.7)
P 		1191.9
(-0.6)
P 		1677.3
(3)
P 		857.8
(-3)
P 		820
avr 1468.6
(3) 		1041.4
(-1.5) 		1367.9
(1.9) 		898.8
(-3) 		570

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1034
1 2 3 4 5 6 range
A 1144.1
(2.4)
P 		1190.3
(3)
P 		693
(-3)
P 		808.2
(-1.6)
P 		935.3
(-0.1)
P 		899.6
(-0.5)
P 		497
B 1727.2
(3)
P 		1058.3
(-1.2)
P 		775
(-3)
P 		781.5
(-3)
P 		1543.1
(1.8)
P 		1613.3
(2.3)
P 		952
C 1295.7
(2.9)
P 		1305
(3)
P 		876.1
(-1.2)
P 		696.8
(-3)
P 		1119.7
(1.2)
P 		923.8
(-0.8)
P 		608
avr 1389
(3) 		1184.5
(1) 		781.4
(-2.8) 		762.2
(-3) 		1199.4
(1.2) 		1145.6
(0.7) 		627
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176769_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8222
Sequence Type Exemplar sequence
Representative Public ID Y50D7A.7 NCBI
Target Description Y50D7A.7 /REP_DB=WormBase Gene ID /WP=CE26144 /GB=AAK68514.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064784(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064784 NCBI Caenorhabditis elegans Alkyl-Dihydroxyacetonephosphate Synthase family member (ads-1) (ads-1) mRNA, complete cds. 11/11 None
GENEFINDER00000021201 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:295504:298530:-1 11/11 None
SNAP00000021189 ENSEMBL cdna:SNAP chromosome:CEL140:III:295713:297869:-1 11/11 None
Y50D7A.7 ENSEMBL cdna:known chromosome:CEL140:III:295662:298555:-1 gene:Y50D7A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:295712-298530(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ads-1
Ensembl Y50D7A.7
Entrez Gene 175192 Entrez gene
SwissProt O45218 EMBL-EBI
WormBase CE26144 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.17463.1.S1_S_AT similar to Alkyldihydroxyacetonephosphate synthase, peroxisomal precursor (Alkyl-DHAP synthase) (Alkylglycerone-phosphate synthase) cfa
CANINE_2:CFAAFFX.20907.1.S1_S_AT similar to Alkyldihydroxyacetonephosphate synthase, peroxisomal precursor (Alkyl-DHAP synthase) (Alkylglycerone-phosphate synthase) cfa
DROSOPHILA_2:1629034_AT dm
DROSGENOME1:147227_AT dm
CHICKEN:GGA.5897.1.S1_AT similar to Alkyldihydroxyacetonephosphate synthase, peroxisomal precursor (Alkyl-DHAP synthase) (Alkylglycerone-phosphate synthase) gga
CHICKEN:GGAAFFX.22846.1.S1_S_AT similar to Alkyldihydroxyacetonephosphate synthase, peroxisomal precursor (Alkyl-DHAP synthase) (Alkylglycerone-phosphate synthase) gga
HG-U133_PLUS_2:205401_AT alkylglycerone phosphate synthase hs
HG-U133A:205401_AT alkylglycerone phosphate synthase hs
HG-FOCUS:205401_AT alkylglycerone phosphate synthase hs
HG-U133A_2:205401_AT alkylglycerone phosphate synthase hs
HUGENEFL:Y09443_AT alkylglycerone phosphate synthase hs
U133_X3P:G4501992_3P_AT alkylglycerone phosphate synthase hs
HG-U95AV2:39225_AT alkylglycerone phosphate synthase hs
HU35KSUBC:RC_N23366_AT Alkylglycerone phosphate synthase hs
HU35KSUBC:RC_AA476253_AT Alkylglycerone phosphate synthase hs
U133_X3P:HS.331666.0.S3_3P_AT Alkylglycerone phosphate synthase hs
U133_X3P:HS.331666.0.S2_3P_AT Alkylglycerone phosphate synthase hs
U133_X3P:HS.331666.0.S1_3P_AT Alkylglycerone phosphate synthase hs
HG-U133_PLUS_2:225108_AT Alkylglycerone phosphate synthase hs
HG-U133B:225108_AT Alkylglycerone phosphate synthase hs
HG-U133_PLUS_2:225113_AT Alkylglycerone phosphate synthase hs
HG-U133B:225113_AT Alkylglycerone phosphate synthase hs
HG-U133_PLUS_2:225114_AT Alkylglycerone phosphate synthase hs
HG-U133B:225114_AT Alkylglycerone phosphate synthase hs
HG-U95B:46065_AT Alkylglycerone phosphate synthase hs
HG-U95B:52114_AT Alkylglycerone phosphate synthase hs
HG-U95E:80793_AT Alkylglycerone phosphate synthase hs
HG-U95E:89870_AT Alkylglycerone phosphate synthase hs
HG-U95B:52112_AT Alkylglycerone phosphate synthase hs
HU35KSUBD:RC_AA620570_AT Alkylglycerone phosphate synthase hs
MG-U74BV2:114481_AT alkylglycerone phosphate synthase mm
MG-U74BV2:108248_AT alkylglycerone phosphate synthase mm
MG-U74BV2:110744_AT alkylglycerone phosphate synthase mm
MG-U74CV2:133913_AT alkylglycerone phosphate synthase mm
MOE430B:1454918_AT alkylglycerone phosphate synthase mm
MOUSE430_2:1454918_AT alkylglycerone phosphate synthase mm
MOUSE430_2:1434919_AT Alkylglycerone phosphate synthase, mRNA (cDNA clone MGC:69957 IMAGE:6332574) mm
MOE430B:1434919_AT Alkylglycerone phosphate synthase, mRNA (cDNA clone MGC:69957 IMAGE:6332574) mm
MOE430B:1443797_AT Alkylglycerone phosphate synthase, mRNA (cDNA clone MGC:69957 IMAGE:6332574) mm
MOUSE430_2:1443797_AT Alkylglycerone phosphate synthase, mRNA (cDNA clone MGC:69957 IMAGE:6332574) mm
MG-U74CV2:167502_I_AT Alkylglycerone phosphate synthase, mRNA (cDNA clone MGC:69957 IMAGE:6332574) mm
MU19KSUBA:TC20688_AT Alkylglycerone phosphate synthase, mRNA (cDNA clone MGC:69957 IMAGE:6332574) mm
RAE230A:1370137_AT alkylglycerone phosphate synthase rn
RAT230_2:1370137_AT alkylglycerone phosphate synthase rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68514 Alkyl-dihydroxyacetonephosphate synthase protein 1 [Caenorhabditis elegans] ref|NP_497185.1| Alkyl-Dihydroxyacetonephosphate Synthase family member (ads-1) [Caenorhabditis elegans] emb|CAA05690.1| alkyl-dihydroxyacetonephosphate synthase [Caenorhabditis elegans] sp|O45218|ADAS_CAEEL Alkyldihydroxyacetonephosphate synthase (Alkyl-DHAP synthase) (Alkylglycerone-phosphate synthase) 0.0
blast CAE69508 Hypothetical protein CBG15716 [Caenorhabditis briggsae] 0.0
blast AAH76825 Agps-prov protein [Xenopus laevis] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006094 EMBL-EBI FAD linked oxidase, N-terminal 5.5E-50
Pfam IPR004113 EMBL-EBI FAD linked oxidase, C-terminal 2.5E-83
Pfam IPR006094 EMBL-EBI FAD linked oxidase, N-terminal 5.5E-50
Pfam IPR004113 EMBL-EBI FAD linked oxidase, C-terminal 2.5E-83
Sequence
Target Sequence 
>C. ELEGANS:176769_S_AT
gtcgacgagatttgtgcggccacgtgtgtctatgagggaaatcgcgaagaagtcgatcag
catgaggagaggctgaataaattggccgagcagttccacggagttgtcggaggcgccgag
aatggtcaatatggatatcggcttacttttgctatcgcctacttgagagaccttggaatg
aaccatggtgtgctcggcgagtcgttcgaaacctcagttccatgggataaggttctcagc
ctttgcaggaatgtcaaggagctgatgaaacgcgaggcaaaagctcagggagtcacgcat
ccagttttagcgaactgcagagtcacccaggtttacgatgccggagcctgtgtgtacttc
tatttcggattcaacgccagaggattgaaaaatggcctagaagtttatgatcgtattgag
acagccgcccgtgacgagatcatcgcttgcggtggaagcatctcacatcaccacggagtc
ggaaagatcagaaaacaatggatgctgaccacgaacggagcagtcggaattgcgttgttg
aaggctatcaagagtgagctggatccggcgaacatcttcgccagtgctaacttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGACGAGATTTGTGCGGCCACGT 170 473 1177 Antisense
GCAGTTCCACGGAGTTGTCGGAGGC 4 311 1266 Antisense
TCGGCTTACTTTTGCTATCGCCTAC 190 607 1314 Antisense
GTTCGAAACCTCAGTTCCATGGGAT 244 443 1380 Antisense
GGTTCTCAGCCTTTGCAGGAATGTC 468 507 1407 Antisense
GGGAGTCACGCATCCAGTTTTAGCG 234 493 1464 Antisense
TCACCCAGGTTTACGATGCCGGAGC 1 625 1499 Antisense
GAGCCTGTGTGTACTTCTATTTCGG 552 385 1520 Antisense
CGTGACGAGATCATCGCTTGCGGTG 582 243 1606 Antisense
ATCTCACATCACCACGGAGTCGGAA 213 33 1636 Antisense
AACATCTTCGCCAGTGCTAACTTAA 449 137 1747 Antisense
Sequence Source Affymetrix Proprietary Database