[Home] | [Total List]

[176763_at]

Description C50E10.1 /REP_DB=WormBase Gene ID /WP=CE28141 /GB=AAC67434.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 35      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.7
(-2.6)
A 		16.8
(3)
A 		1.7
(-3)
A 		11.3
(0.8)
A 		15
B 3.3
(-1.3)
A 		6.9
(3)
A 		4.9
(0.6)
A 		1.9
(-3)
A 		5
C 1.5
(-3)
A 		4.4
(3)
A 		2.1
(-1.8)
A 		4.3
(2.8)
A 		3
avr 2.5
(-3) 		9.4
(3) 		2.9
(-2.7) 		5.8
(-0.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 3.1
(-3)
A 		3.8
(-3)
A 		4.2
(-3)
A 		3
(-3)
A 		64
(-0.5)
A 		150.2
(3)
P 		147
B 2.7
(-2.9)
A 		1
(-3)
A 		4.8
(-2.8)
A 		3.1
(-2.9)
A 		67.3
(-0.1)
P 		139.5
(3)
P 		139
C 2.2
(-2.9)
A 		0.8
(-3)
A 		7.2
(-2.7)
A 		4.6
(-2.8)
A 		37.7
(-1.4)
A 		140.2
(3)
P 		139
avr 2.7
(-3) 		1.9
(-3) 		5.4
(-2.9) 		3.6
(-2.9) 		56.3
(-0.7) 		143.3
(3) 		141
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1
(-1.9)
A 		3.6
(3)
A 		0.4
(-3)
A 		1.7
(-0.6)
A 		3
B 1
(-0.2)
A 		1.7
(3)
A 		1.1
(0.2)
A 		0.4
(-3)
A 		1
C 0.5
(-3)
A 		1.3
(3)
A 		0.7
(-1.5)
A 		0.7
(-1.5)
A 		1
avr 0.8
(-2.6) 		2.2
(3) 		0.7
(-3) 		0.9
(-2.2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.3
(-2.9)
A 		0.9
(-3)
A 		0.8
(-3)
A 		19.3
(0.1)
A 		36.6
(3)
P 		36
B 1
(-2.9)
A 		0.3
(-3)
A 		1.2
(-2.9)
A 		0.8
(-2.9)
A 		27.3
(0.1)
P 		52
(3)
P 		52
C 0.8
(-2.9)
A 		0.3
(-3)
A 		1.8
(-2.8)
A 		0.9
(-2.9)
A 		12.2
(-1.5)
A 		46.9
(3)
P 		47
avr 0.8
(-3) 		0.6
(-3) 		1.3
(-2.9) 		0.8
(-3) 		19.6
(-0.4) 		45.2
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176763_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3090
Sequence Type Exemplar sequence
Representative Public ID C50E10.1 NCBI
Target Description C50E10.1 /REP_DB=WormBase Gene ID /WP=CE28141 /GB=AAC67434.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064210(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064210 NCBI Caenorhabditis elegans C50E10.1 (C50E10.1) mRNA, complete cds. 11/11 None
GENEFINDER00000034844 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12301241:12302284:-1 11/11 None
C50E10.1 ENSEMBL cdna:known chromosome:CEL140:II:12301043:12302313:-1 gene:C50E10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12301485-12302281(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50E10.1
Entrez Gene 174873 Entrez gene
SwissProt Q95NF0 EMBL-EBI
WormBase CE28141 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_496611 C50E10.1 [Caenorhabditis elegans] gb|AAK73858.1| Hypothetical protein C50E10.1 [Caenorhabditis elegans] 2.0E-42
blast NP_496611 C50E10.1 [Caenorhabditis elegans] gb|AAK73858.1| Hypothetical protein C50E10.1 [Caenorhabditis elegans] 2.0E-39
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000034844 1 146-163
Sequence
Target Sequence 
>C. ELEGANS:176763_AT
ggacatggacaagcgatcatcggatttggaagctgctcttcgaattgtgctccagcagac
tttgaacatcgttttgcaagcgcaggagaagctccccgaggcaaatgtggtaccctcaac
tccgcccacctcaccgagcactgatatcggcgaacaaatggcatcgttctggaatattcc
atcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACATGGACAAGCGATCATCGGAT 519 525 15 Antisense
ATCATCGGATTTGGAAGCTGCTCTT 73 31 30 Antisense
GTGCTCCAGCAGACTTTGAACATCG 178 479 61 Antisense
TTGAACATCGTTTTGCAAGCGCAGG 137 683 76 Antisense
TGCAAGCGCAGGAGAAGCTCCCCGA 251 577 89 Antisense
AGCTCCCCGAGGCAAATGTGGTACC 234 79 104 Antisense
GAGGCAAATGTGGTACCCTCAACTC 408 405 112 Antisense
CCACCTCACCGAGCACTGATATCGG 48 275 140 Antisense
CGAGCACTGATATCGGCGAACAAAT 591 249 149 Antisense
GGCGAACAAATGGCATCGTTCTGGA 144 539 163 Antisense
GCATCGTTCTGGAATATTCCATCAC 302 309 175 Antisense
Sequence Source Affymetrix Proprietary Database