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[176761_at]

Description C52A10.3 /REP_DB=WormBase Gene ID /WP=CE17584 /GB=AAK68263.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 2.6
(-2.1)
A 		7.4
(3)
A 		1.8
(-3)
A 		4.7
(0.1)
A 		6
B 6
(-1.5)
A 		4.3
(-3)
A 		5.7
(-1.8)
A 		11.1
(3)
A 		7
C 4.7
(-3)
A 		8.5
(-1.9)
A 		5.9
(-2.7)
A 		26
(3)
A 		21
avr 4.4
(-3) 		6.7
(-1.5) 		4.5
(-2.9) 		13.9
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 9.7
(-1.9)
A 		2.6
(-3)
A 		40.4
(3)
A 		3.7
(-2.8)
A 		6.2
(-2.4)
A 		9.6
(-1.9)
A 		38
B 3.2
(-2.5)
A 		2.8
(-2.7)
A 		1.8
(-3)
A 		5.3
(-1.8)
A 		3.2
(-2.5)
A 		19.7
(3)
A 		18
C 2.9
(-2.8)
A 		2.6
(-3)
A 		8.7
(0.5)
A 		13.1
(3)
A 		6.2
(-0.9)
A 		6
(-1.1)
A 		11
avr 5.3
(-1.9) 		2.7
(-3) 		17
(3) 		7.4
(-1) 		5.2
(-2) 		11.8
(0.8) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.9
(-0.8)
A 		1.6
(3)
A 		0.5
(-3)
A 		0.7
(-1.9)
A 		1
B 1.9
(0.7)
A 		1.1
(-3)
A 		1.3
(-2.1)
A 		2.4
(3)
A 		1
C 1.6
(-3)
A 		2.4
(-1.3)
A 		2.1
(-1.9)
A 		4.4
(3)
A 		3
avr 1.5
(-2) 		1.7
(-1) 		1.3
(-3) 		2.5
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.8
(-2.3)
A 		0.9
(-3)
A 		8.8
(3)
A 		0.9
(-3)
A 		1.9
(-2.2)
A 		2.3
(-1.9)
A 		8
B 1.1
(-2.4)
A 		0.9
(-2.6)
A 		0.4
(-3)
A 		1.4
(-2.1)
A 		1.3
(-2.2)
A 		7.3
(3)
A 		7
C 1.1
(-2)
A 		0.8
(-3)
A 		2.2
(1.7)
A 		2.6
(3)
A 		2
(1)
A 		2
(1)
A 		2
avr 1.3
(-2.2) 		0.9
(-3) 		3.8
(2.8) 		1.6
(-1.6) 		1.7
(-1.4) 		3.9
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176761_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12310
Sequence Type Exemplar sequence
Representative Public ID C52A10.3 NCBI
Target Description C52A10.3 /REP_DB=WormBase Gene ID /WP=CE17584 /GB=AAK68263.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071998(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071998 NCBI Caenorhabditis elegans C52A10.3 (C52A10.3) mRNA, complete cds. 11/11 None
SNAP00000017569 ENSEMBL cdna:SNAP chromosome:CEL140:V:5237425:5238868:-1 11/11 None
GENEFINDER00000017571 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5237425:5239252:-1 11/11 None
C52A10.3 ENSEMBL cdna:known chromosome:CEL140:V:5237425:5239252:-1 gene:C52A10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5237424-5239252(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C52A10.3
Entrez Gene 183711 Entrez gene
SwissProt Q95YC2 EMBL-EBI
WormBase CE17584 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68263 Hypothetical protein C52A10.3 [Caenorhabditis elegans] ref|NP_504399.1| C52A10.3 [Caenorhabditis elegans] 0.0
blast AAK68263 Hypothetical protein C52A10.3 [Caenorhabditis elegans] ref|NP_504399.1| C52A10.3 [Caenorhabditis elegans] 1.0E-169
blast AAK68263 Hypothetical protein C52A10.3 [Caenorhabditis elegans] ref|NP_504399.1| C52A10.3 [Caenorhabditis elegans] 1.0E-122
blast CAA21028 Hypothetical protein Y39A1A.16 [Caenorhabditis elegans] ref|NP_499353.1| Y39A1A.16 [Caenorhabditis elegans] 7.0E-53
blast AAF39964 Hypothetical protein T02H6.5 [Caenorhabditis elegans] ref|NP_493792.1| T02H6.5 [Caenorhabditis elegans] 2.0E-48
blast CAA21028 Hypothetical protein Y39A1A.16 [Caenorhabditis elegans] ref|NP_499353.1| Y39A1A.16 [Caenorhabditis elegans] 1.0E-37
blast CAA21028 Hypothetical protein Y39A1A.16 [Caenorhabditis elegans] ref|NP_499353.1| Y39A1A.16 [Caenorhabditis elegans] 2.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.9E-5
Sequence
Target Sequence 
>C. ELEGANS:176761_AT
gaacctgttcgaagtagatcacatcgatttgcaatttgatattgatcaacttttcggaga
ttaccaatttctattaaacaaaccgtggttgacaaaatgcaaatacgagttggtcggtag
ggagatattcctcacatctgagcaactgagcaaggttttgaatagtattagtgtggaaca
cggattgacactcaaatgccagtttgcaatggatctcgacaaaactatattattaaatat
tcgccgactggactcctatttcaacccaggcttcacactcgatgatttgaaatccatgaa
ctgtgaagagctgataatctggaaacatagtttcacaccagaagacattaacaattttat
tcgtaattggttaaacggtagcatgcaaacactgaaaagattccacttgagcaatgctct
cgaaacaagagattttgttatagtgttgaatgaaattgcagtaaatagatgggacggagt
acggcgagcagaatattacagaatcggaattcaagaatttgactgttccgatggatggga
tatcgaaaggaatgatggagtcattgctactgcactgtttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCTGTTCGAAGTAGATCACATC 533 345 504 Antisense
GGTCGGTAGGGAGATATTCCTCACA 309 503 615 Antisense
ATTCCTCACATCTGAGCAACTGAGC 698 7 630 Antisense
GATTGACACTCAAATGCCAGTTTGC 156 435 686 Antisense
AAATATTCGCCGACTGGACTCCTAT 642 113 738 Antisense
ACTGGACTCCTATTTCAACCCAGGC 669 95 750 Antisense
CCAGGCTTCACACTCGATGATTTGA 28 273 769 Antisense
GAAACATAGTTTCACACCAGAAGAC 474 355 825 Antisense
AAGATTCCACTTGAGCAATGCTCTC 693 155 900 Antisense
GATGGGACGGAGTACGGCGAGCAGA 172 409 971 Antisense
GAGTCATTGCTACTGCACTGTTTGG 436 399 1061 Antisense
Sequence Source Affymetrix Proprietary Database