[Home] | [Total List]

[176759_s_at]

Description W09G12.1 /REP_DB=WormBase Gene ID /WP=CE23182 /GB=AAC04453.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 01      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 16.7
(3)
A 		10.7
(-0.9)
A 		12.6
(0.3)
A 		7.5
(-3)
A 		9
B 5.1
(-3)
A 		6.3
(-2.6)
A 		23.8
(3)
A 		19.2
(1.5)
A 		19
C 11.6
(-2.9)
A 		15.7
(-2.6)
A 		10.8
(-3)
A 		90.4
(3)
A 		80
avr 11.1
(-3) 		10.9
(-3) 		15.7
(-2) 		39
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 377
1 2 3 4 5 6 range
A 14.1
(-2.8)
A 		10
(-2.9)
A 		9.1
(-2.9)
A 		3.4
(-3)
A 		86.9
(-1.5)
A 		340.7
(3)
P 		337
B 49.6
(-2.3)
A 		29.4
(-2.6)
A 		5.4
(-3)
A 		30.6
(-2.6)
A 		58.3
(-2.1)
A 		363
(3)
P 		358
C 65.1
(-2.1)
A 		35.1
(-2.6)
A 		9.8
(-3)
A 		61.2
(-2.2)
A 		32.6
(-2.6)
A 		379.9
(3)
P 		370
avr 42.9
(-2.4) 		24.8
(-2.7) 		8.1
(-3) 		31.7
(-2.6) 		59.3
(-2.1) 		361.2
(3) 		353
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.1
(3)
A 		2.3
(-1.6)
A 		3.3
(-0.4)
A 		1.1
(-3)
A 		5
B 1.6
(-3)
A 		1.6
(-3)
A 		5.5
(3)
A 		4.1
(0.8)
A 		4
C 3.8
(-3)
A 		4.5
(-2.6)
A 		3.8
(-3)
A 		15.2
(3)
A 		11
avr 3.8
(-1.5) 		2.8
(-3) 		4.2
(-0.9) 		6.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 2.6
(-2.9)
A 		3.6
(-2.8)
A 		2
(-2.9)
A 		0.9
(-3)
A 		26.2
(-1.2)
A 		83
(3)
P 		82
B 17.3
(-2.3)
A 		9.8
(-2.6)
A 		1.3
(-3)
A 		8.1
(-2.7)
A 		23.7
(-2)
A 		135.4
(3)
P 		134
C 24.1
(-2)
A 		10.7
(-2.6)
A 		2.5
(-3)
A 		12.3
(-2.5)
A 		10.6
(-2.6)
A 		127.2
(3)
P 		125
avr 14.7
(-2.3) 		8
(-2.7) 		1.9
(-3) 		7.1
(-2.7) 		20.2
(-2) 		115.2
(3) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176759_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10782
Sequence Type Exemplar sequence
Representative Public ID W09G12.1 NCBI
Target Description W09G12.1 /REP_DB=WormBase Gene ID /WP=CE23182 /GB=AAC04453.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067651(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067651 NCBI Caenorhabditis elegans Delta/Serrate/Lag-2 domain family member (dsl-2) (dsl-2) mRNA, complete cds. 11/11 None
SNAP00000042738 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1202697:1204961:-1 11/11 None
GENEFINDER00000042749 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1202719:1204961:-1 11/11 None
W09G12.1 ENSEMBL cdna:known chromosome:CEL140:IV:1202662:1204965:-1 gene:W09G12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1202702-1204967(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dsl-2
Ensembl W09G12.1
Entrez Gene 176938 Entrez gene
SwissProt O45203 EMBL-EBI
WormBase CE23182 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7154 cell communication inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_500052 Delta/Serrate/Lag-2 domain family member (dsl-2) [Caenorhabditis elegans] gb|AAC04453.2| Delta/serrate/lag-2 domain protein 2 [Caenorhabditis elegans] 1.0E-175
blast NP_500052 Delta/Serrate/Lag-2 domain family member (dsl-2) [Caenorhabditis elegans] gb|AAC04453.2| Delta/serrate/lag-2 domain protein 2 [Caenorhabditis elegans] 1.0E-171
blast CAE64700 Hypothetical protein CBG09483 [Caenorhabditis briggsae] 3.0E-21
blast CAE64700 Hypothetical protein CBG09483 [Caenorhabditis briggsae] 4.0E-21
blast CAD91627 Hypothetical protein F15B9.9 [Caenorhabditis elegans] ref|NP_001023803.1| Delta/Serrate/Lag-2 domain family member (dsl-7) [Caenorhabditis elegans] 5.0E-19
blast CAD91627 Hypothetical protein F15B9.9 [Caenorhabditis elegans] ref|NP_001023803.1| Delta/Serrate/Lag-2 domain family member (dsl-7) [Caenorhabditis elegans] 6.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR001774 EMBL-EBI Delta/Serrate/lag-2 (DSL) protein 6.1E-12
Sequence
Target Sequence 
>C. ELEGANS:176759_S_AT
gtattgcgatgaggacgctgcccacttggttggtatgagatgtaataagaagggagtgat
gggatgtaacgaaggattctgtggcccgaattgtgatcagacaaaaagtcaatgctcaat
gatgtgcgcttgcgagaacgatgcaccatgttactcgtcaacggatccacgtacttcacg
agaatacgtctactgcgaatgcctgacgggattcgagggaaaatattgccaaaatgtcac
atttcccccagaaatgccgaaattccgcacagtgatgctcggagccaacgggaaaatatt
caaagtgctcgaaaacaagaatttggtgaaaaacgagttctactgggcaaattccagcgc
aaaattcgagcttttggctgaaaatgcggagaatttcccggctccggagagtttttggca
attggctcgggaatttttggaagatctgttctctgagacggatccgtggacccctgtgat
tttcattggaattttcgggctttttctggtttttcactgccaagctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTGCGATGAGGACGCTGCCCAC 214 453 411 Antisense
CGCTGCCCACTTGGTTGGTATGAGA 581 255 426 Antisense
GTAACGAAGGATTCTGTGGCCCGAA 320 459 476 Antisense
AATGCTCAATGATGTGCGCTTGCGA 96 167 521 Antisense
GCGAGAACGATGCACCATGTTACTC 284 289 542 Antisense
GTTACTCGTCAACGGATCCACGTAC 98 447 560 Antisense
AGAATACGTCTACTGCGAATGCCTG 332 75 591 Antisense
GCCGAAATTCCGCACAGTGATGCTC 290 285 666 Antisense
TCCCGGCTCCGGAGAGTTTTTGGCA 20 587 806 Antisense
TGGACCCCTGTGATTTTCATTGGAA 288 549 877 Antisense
TTCTGGTTTTTCACTGCCAAGCTGT 617 687 914 Antisense
Sequence Source Affymetrix Proprietary Database