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[176757_at]

Description C02F12.3 /REP_DB=WormBase Gene ID /WP=CE03898 /GB=AAK39133.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 30      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 23      6grp_total > 42      4grp_total > 23      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3280
1 2 3 4 range
A 4023.4
(3)
P 		1602.5
(-2)
P 		1101.6
(-3)
P 		3548.8
(2)
P 		2922
B 3793.4
(3)
P 		1621.9
(-2.1)
P 		1254.6
(-3)
P 		3410.9
(2.1)
P 		2539
C 4381.9
(3)
P 		1719
(-2)
P 		1183.1
(-3)
P 		3205
(0.8)
P 		3199
avr 4066.2
(3) 		1647.8
(-2) 		1179.8
(-3) 		3388.2
(1.6) 		2886

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1454
1 2 3 4 5 6 range
A 2321.7
(0.3)
P 		2108.5
(-0.6)
P 		2953
(3)
P 		1892.2
(-1.5)
P 		1729.6
(-2.2)
P 		1537.2
(-3)
P 		1416
B 2259.7
(0.3)
P 		1976.3
(-1.3)
P 		2738.4
(3)
P 		2202.9
(-0)
P 		1842.7
(-2)
P 		1668
(-3)
P 		1070
C 2142.1
(3)
P 		2057
(2.2)
P 		1937.8
(1.1)
P 		2013.4
(1.8)
P 		1499.4
(-3)
P 		1814
(-0.1)
P 		643
avr 2241.2
(0.9) 		2047.3
(-0.4) 		2543.1
(3) 		2036.2
(-0.5) 		1690.6
(-2.9) 		1673.1
(-3) 		870
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1177
1 2 3 4 range
A 1464.9
(3)
P 		347.9
(-2.7)
P 		288
(-3)
P 		519.5
(-1.8)
P 		1177
B 1209.7
(3)
P 		400.6
(-2.3)
P 		290.7
(-3)
P 		726.9
(-0.2)
P 		919
C 1450.5
(3)
P 		494.2
(-2.5)
P 		412.4
(-3)
P 		540.4
(-2.3)
P 		1038
avr 1375
(3) 		414.2
(-2.5) 		330.4
(-3) 		595.6
(-1.5) 		1045

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 420
1 2 3 4 5 6 range
A 428
(-2.1)
P 		749.9
(3)
P 		643.1
(1.3)
P 		479.9
(-1.3)
P 		521.9
(-0.6)
P 		374.3
(-3)
P 		376
B 786.3
(3)
P 		657.8
(-0.8)
P 		665
(-0.6)
P 		583.5
(-3)
P 		748.7
(1.9)
P 		622
(-1.9)
P 		203
C 794
(3)
P 		627.7
(0.4)
P 		493.2
(-1.6)
P 		404.9
(-3)
P 		485.2
(-1.8)
P 		607.2
(0.1)
P 		389
avr 669.4
(2.7) 		678.5
(3) 		600.4
(0.5) 		489.4
(-3) 		585.3
(0) 		534.5
(-1.6) 		189
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176757_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18218
Sequence Type Exemplar sequence
Representative Public ID C02F12.3 NCBI
Target Description C02F12.3 /REP_DB=WormBase Gene ID /WP=CE03898 /GB=AAK39133.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076230(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076230 NCBI Caenorhabditis elegans C02F12.3 (C02F12.3) mRNA, complete cds. 9/11 None
GENEFINDER00000032673 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3667354:3668858:-1 11/11 None
SNAP00000032658 ENSEMBL cdna:SNAP chromosome:CEL140:X:3668407:3668858:-1 9/11 None
C02F12.3.1 ENSEMBL cdna:known chromosome:CEL140:X:3668081:3668894:-1 gene:C02F12.3 9/11 None
C02F12.3.2 ENSEMBL cdna:known chromosome:CEL140:X:3668087:3668894:-1 gene:C02F12.3 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3667835-3668859(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02F12.3
Entrez Gene 182125 Entrez gene
SwissProt Q11099 EMBL-EBI
WormBase CE30849 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T34077 hypothetical protein C02F12.3 - Caenorhabditis elegans 7.0E-63
blast AAK39133 Hypothetical protein C02F12.3 [Caenorhabditis elegans] ref|NP_508631.2| C02F12.3 [Caenorhabditis elegans] sp|Q11099|YL13_CAEEL Hypothetical protein C02F12.3 in chromosome X precursor 5.0E-45
blast AAK39133 Hypothetical protein C02F12.3 [Caenorhabditis elegans] ref|NP_508631.2| C02F12.3 [Caenorhabditis elegans] sp|Q11099|YL13_CAEEL Hypothetical protein C02F12.3 in chromosome X precursor 1.0E-42
blast T34077 hypothetical protein C02F12.3 - Caenorhabditis elegans 2.0E-42
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000032673 2 4-21,127-146
Sequence
Target Sequence 
>C. ELEGANS:176757_AT
gttccactgtactactcactggattgcagaaaattctcgtttgcaccagcttgtcgtgga
atcatgctcaaaagatccggaggtcatccgatgattgcggaacaacaaccaatgattgat
aatgcgaaagcccgcgaagttcaaatgatggagctccttatccgaaatatcgaagacgaa
gcgttgattgccaactcagactgcgtcagcatgtcctggctccgggatcgtctcgtcaac
gccaagaacggttcgtacaacatttggttcttacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCCACTGTACTACTCACTGGATT 409 441 55 Antisense
GCAGAAAATTCTCGTTTGCACCAGC 148 313 80 Antisense
GTTTGCACCAGCTTGTCGTGGAATC 476 451 93 Antisense
GCTTGTCGTGGAATCATGCTCAAAA 342 307 103 Antisense
AAGATCCGGAGGTCATCCGATGATT 384 155 126 Antisense
TAATGCGAAAGCCCGCGAAGTTCAA 65 623 174 Antisense
GATGGAGCTCCTTATCCGAAATATC 539 407 201 Antisense
AGCGTTGATTGCCAACTCAGACTGC 40 79 234 Antisense
CTCAGACTGCGTCAGCATGTCCTGG 359 229 249 Antisense
TCGTCTCGTCAACGCCAAGAACGGT 75 605 282 Antisense
TTCGTACAACATTTGGTTCTTACCA 379 691 306 Antisense
Sequence Source Affymetrix Proprietary Database