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[176755_at] transposase

Description T22F7.4 /REP_DB=WormBase Gene ID /WP=CE01418 /GB=AAA20673.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 51      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 33      6grp_total > 41      4grp_total > 53      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1507
1 2 3 4 range
A 1885.8
(3)
P 		1476.6
(1.3)
P 		1068.1
(-0.4)
P 		435.9
(-3)
P 		1450
B 1856.3
(3)
P 		1387.7
(0.9)
P 		1036.2
(-0.8)
P 		545
(-3)
P 		1311
C 1943.3
(3)
P 		1433.4
(0.9)
P 		1062.2
(-0.6)
P 		457.1
(-3)
P 		1486
avr 1895.1
(3) 		1432.6
(1) 		1055.5
(-0.6) 		479.3
(-3) 		1416

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2735
1 2 3 4 5 6 range
A 1297.6
(-1.1)
P 		1648.4
(-0.2)
P 		2946
(3)
P 		2217.5
(1.2)
P 		1022.1
(-1.8)
P 		531.6
(-3)
P 		2414
B 1415.7
(-1)
P 		2139.3
(0.5)
P 		3258
(3)
P 		1957.6
(0.1)
P 		1101.9
(-1.7)
P 		523
(-3)
P 		2735
C 1252.9
(-0.8)
P 		2045.7
(1.7)
P 		2117.1
(2)
P 		2445.1
(3)
P 		899
(-1.9)
P 		546.7
(-3)
P 		1898
avr 1322.1
(-0.9) 		1944.5
(0.8) 		2773.7
(3) 		2206.7
(1.5) 		1007.7
(-1.7) 		533.8
(-3) 		2240
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 623
1 2 3 4 range
A 686.6
(3)
P 		320.5
(-0.5)
P 		279.2
(-0.9)
P 		63.8
(-3)
P 		623
B 592
(3)
P 		342.7
(-0.1)
P 		240.1
(-1.4)
P 		116.1
(-3)
P 		476
C 643.3
(3)
P 		412.1
(0.5)
P 		370.2
(0.1)
P 		77.1
(-3)
P 		566
avr 640.6
(3) 		358.4
(-0.1) 		296.5
(-0.7) 		85.7
(-3) 		555

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 662
1 2 3 4 5 6 range
A 239.2
(-1.7)
P 		586.2
(2.4)
P 		641.6
(3)
P 		562.4
(2.1)
P 		308.4
(-0.9)
P 		129.4
(-3)
P 		512
B 492.6
(-0)
P 		712.1
(2.2)
P 		791.1
(3)
P 		518.5
(0.3)
P 		447.7
(-0.5)
P 		195
(-3)
P 		596
C 464.4
(0.8)
P 		624.2
(3)
P 		538.8
(1.8)
P 		491.7
(1.2)
P 		290.9
(-1.5)
P 		183
(-3)
P 		441
avr 398.7
(-0.2) 		640.8
(2.8) 		657.2
(3) 		524.2
(1.4) 		349
(-0.8) 		169.1
(-3) 		488
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176755_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8134
Sequence Type Exemplar sequence
Representative Public ID T22F7.4 NCBI
Target Description T22F7.4 /REP_DB=WormBase Gene ID /WP=CE01418 /GB=AAA20673.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064807(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064807 NCBI Caenorhabditis elegans T22F7.4 (transposase) mRNA, complete cds. 11/11 None
SNAP00000006220 ENSEMBL cdna:SNAP chromosome:CEL140:III:525382:526883:-1 11/11 None
GENEFINDER00000006225 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:525382:527770:-1 11/11 None
T22F7.4 ENSEMBL cdna:known chromosome:CEL140:III:525382:527770:-1 gene:T22F7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:525465-526919(-) 60.98 60.98
Public Domain and Genome References
Gene Title transposase
Ensembl T22F7.4
Entrez Gene 188758 Entrez gene
SwissProt Q8MP14 EMBL-EBI
WormBase CE01418 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA20673 Hypothetical protein T22F7.4 [Caenorhabditis elegans] ref|NP_497208.1| T22F7.4 [Caenorhabditis elegans] 1.0E-159
blast AAA20673 Hypothetical protein T22F7.4 [Caenorhabditis elegans] ref|NP_497208.1| T22F7.4 [Caenorhabditis elegans] 1.0E-100
blast CAA94146 Hypothetical protein K02D3.1 [Caenorhabditis elegans] ref|NP_510292.1| K02D3.1 [Caenorhabditis elegans] 2.0E-19
blast CAA94146 Hypothetical protein K02D3.1 [Caenorhabditis elegans] ref|NP_510292.1| K02D3.1 [Caenorhabditis elegans] 4.0E-19
blast AAB42339 Hypothetical protein C24G7.3 [Caenorhabditis elegans] ref|NP_491294.1| C24G7.3 [Caenorhabditis elegans] 3.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497208.1 1 84-106
T22F7.4 1 84-106
GENEFINDER00000006225 1 84-106
Sequence
Target Sequence 
>C. ELEGANS:176755_AT
gtacctctccattcaagggctgatcgccgaggagaaggtgattttcaccgatgatcagat
catgatcataattgatcgaatatgtaataaaggctttaattgtcccaaggatacatacgc
aacgttcacatctcctgggcggtccacttggaagaaggaaaaaattttcgaatcaaatct
catcaaaaactacaagaatggattaatagaaatgagcgaaatttatccgctgtttttgaa
ggaattctgttgcgaaaccctcgaatgtttctctcgcaattgcagattctttcaaagacc
tgaggaaaaagcgctgatcaagcatgtgatgaagaacttcggagccaatgctcccaaact
tttcgagttgaatcttgaagaacttgaggaattccgtgagcctgttatgcatcaaatcga
gcacaaaacctacgaaaaccaaaaaaaccctcactacacagcacaagtcgaagatctttt
cgattatctgcacaagcatcatgacagaattcttcagcggttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACCTCTCCATTCAAGGGCTGATC 34 459 303 Antisense
TACATACGCAACGTTCACATCTCCT 628 643 414 Antisense
CTCCTGGGCGGTCCACTTGGAAGAA 588 229 434 Antisense
GCGAAATTTATCCGCTGTTTTTGAA 429 287 518 Antisense
AAGGAATTCTGTTGCGAAACCCTCG 630 159 541 Antisense
CGAAACCCTCGAATGTTTCTCTCGC 141 253 555 Antisense
GTTTCTCTCGCAATTGCAGATTCTT 288 451 569 Antisense
GCCAATGCTCCCAAACTTTTCGAGT 377 277 646 Antisense
GAATTCCGTGAGCCTGTTATGCATC 56 325 691 Antisense
CCCTCACTACACAGCACAAGTCGAA 58 259 750 Antisense
ATGACAGAATTCTTCAGCGGTTCAA 135 45 803 Antisense
Sequence Source Affymetrix Proprietary Database