[Home] | [Total List]

[176753_s_at]

Description T10F2.3 /REP_DB=WormBase Gene ID /WP=CE26951 /GB=AAK21468.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 57      6grp_total > 58      4grp_total > 47      6grp_cgc > 17      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 178.4
(3)
P 		62.7
(-3)
A 		107.2
(-0.7)
A 		87
(-1.7)
A 		116
B 118.7
(3)
P 		43.5
(-3)
A 		67.4
(-1.1)
A 		72.2
(-0.7)
A 		75
C 189.8
(3)
P 		77.4
(-2.8)
A 		74.4
(-3)
P 		89.2
(-2.2)
A 		115
avr 162.3
(3) 		61.2
(-3) 		83
(-1.7) 		82.8
(-1.7) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 89
(0.4)
A 		82.3
(-0.4)
P 		59.3
(-3)
A 		79.1
(-0.8)
P 		63
(-2.6)
P 		112.1
(3)
P 		53
B 98.2
(-1.2)
P 		84.1
(-2)
P 		66.7
(-3)
P 		70.5
(-2.8)
M 		82
(-2.1)
P 		171.3
(3)
P 		105
C 143.5
(3)
P 		60.1
(-3)
P 		100.7
(-0.1)
P 		68.5
(-2.4)
A 		75.3
(-1.9)
P 		99.7
(-0.2)
P 		83
avr 110.2
(1.1) 		75.5
(-2.7) 		75.6
(-2.7) 		72.7
(-3) 		73.4
(-2.9) 		127.7
(3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 64.9
(3)
P 		13.6
(-2.9)
A 		28
(-1.2)
A 		12.7
(-3)
A 		52
B 37.9
(3)
P 		10.7
(-3)
A 		15.6
(-1.9)
A 		15.4
(-2)
A 		27
C 62.8
(3)
P 		22.3
(-2.1)
A 		25.9
(-1.6)
P 		15
(-3)
A 		48
avr 55.2
(3) 		15.5
(-2.8) 		23.2
(-1.7) 		14.4
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 16.4
(-1.7)
A 		29.3
(3)
P 		12.9
(-3)
A 		20.1
(-0.4)
P 		19
(-0.8)
P 		27.3
(2.3)
P 		16
B 34.2
(-0.7)
P 		28
(-1.5)
P 		16.2
(-3)
P 		18.7
(-2.7)
M 		33.3
(-0.8)
P 		63.9
(3)
P 		48
C 53.2
(3)
P 		18.4
(-2.3)
P 		25.6
(-1.2)
P 		13.8
(-3)
A 		24.4
(-1.4)
P 		33.4
(-0)
P 		39
avr 34.6
(1.3) 		25.2
(-1.1) 		18.2
(-2.8) 		17.5
(-3) 		25.6
(-1) 		41.5
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176753_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7862
Sequence Type Exemplar sequence
Representative Public ID T10F2.3 NCBI
Target Description T10F2.3 /REP_DB=WormBase Gene ID /WP=CE26951 /GB=AAK21468.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065694(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065694 NCBI Caenorhabditis elegans Ubiquitin-Like Protease family member (ulp-1) (ulp-1) mRNA, complete cds. 11/11 None
T10F2.3 ENSEMBL cdna:known chromosome:CEL140:III:5165625:5169756:-1 gene:T10F2.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029353 3/11 Cross Hyb Matching Probes None
GENEFINDER00000029367 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5166009-5169695(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ulp-1
Ensembl T10F2.3
Entrez Gene 175704 Entrez gene
SwissProt Q09353 EMBL-EBI
WormBase CE33694 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:245521_AT Ulp1 protease family protein at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8234 cysteine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_498095 Ubiquitin-Like Protease family member (ulp-1) [Caenorhabditis elegans] gb|AAK21468.3| Ubiquitin-like protease protein 1 [Caenorhabditis elegans] dbj|BAC22612.1| similar to SUMO-1-specific protease [Caenorhabditis elegans] sp|Q09353|SENT_CAEEL Probable sentrin-specific protease 0.0
blast T16845 hypothetical protein T10F2.3 - Caenorhabditis elegans 0.0
blast CAE73778 Hypothetical protein CBG21323 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003653 EMBL-EBI Peptidase C48, SUMO/Sentrin/Ubl1 3.2E-52
Sequence
Target Sequence 
>C. ELEGANS:176753_S_AT
gaatcgctattcgtccgaaggtggagaagaagaaagttgatgattttatggctttacctg
atgctgctgatgctcttgtagaaagagcatggagcggagggaatccaaatgaacaatttg
tggatgcattcagcattcagatctgtaaaaaagatcttgcaacattgagtggattgcatt
ggctgaatgatgagatcatcaatttctatcttcaattgatttgtgatcggagcaatggcg
attcgaaatatccaaagatctatgcattcaacacattcttttattccaatattgtttcaa
aaggatacgcgagtgtgaaacgatggacaagaaaagtcgatatctttgcattcgacatcg
ttttggtgccagttcatcttggaatgcattggtgtatggctgttatcgatatgggcgaaa
agaagattgagttttatgactctctttatgatggaaatacagccgttttgccagcattgc
gaggttact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCGCTATTCGTCCGAAGGTGGA 120 329 1388 Antisense
TTATGGCTTTACCTGATGCTGCTGA 560 679 1433 Antisense
GATGCTGCTGATGCTCTTGTAGAAA 26 415 1447 Antisense
ATTCAACACATTCTTTTATTCCAAT 546 11 1653 Antisense
GATATCTTTGCATTCGACATCGTTT 592 425 1726 Antisense
ATTCGACATCGTTTTGGTGCCAGTT 226 7 1737 Antisense
TGGTGCCAGTTCATCTTGGAATGCA 159 553 1751 Antisense
GTGTATGGCTGTTATCGATATGGGC 683 485 1779 Antisense
GTTTTATGACTCTCTTTATGATGGA 325 449 1818 Antisense
ATGGAAATACAGCCGTTTTGCCAGC 616 51 1838 Antisense
GTTTTGCCAGCATTGCGAGGTTACT 34 447 1852 Antisense
Sequence Source Affymetrix Proprietary Database