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[176751_at]

Description C36B7.3 /REP_DB=WormBase Gene ID /WP=CE04174 /GB=AAK68229.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 02      6grp_total_sub > Cup      6grp_rule_based > S2      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 426
1 2 3 4 range
A 99.4
(-2.2)
A 		48.7
(-3)
A 		64.2
(-2.8)
A 		443.7
(3)
P 		395
B 17.6
(-3)
A 		65.6
(-2)
A 		45.8
(-2.4)
A 		319.5
(3)
P 		302
C 63.8
(-2.3)
A 		67.2
(-2.3)
A 		24.3
(-3)
A 		375.1
(3)
P 		351
avr 60.3
(-2.7) 		60.5
(-2.7) 		44.8
(-3) 		379.4
(3) 		335

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 46
(-1)
A 		78.7
(1.6)
A 		95.6
(3)
P 		41.2
(-1.4)
A 		69.4
(0.9)
A 		21.4
(-3)
A 		74
B 95.9
(2.4)
M 		102.4
(3)
A 		84.5
(1.3)
A 		49.7
(-2.1)
A 		50.3
(-2.1)
A 		40.8
(-3)
A 		62
C 62
(0.1)
A 		111.8
(3)
P 		50
(-0.6)
A 		8.8
(-3)
A 		15
(-2.6)
A 		64.4
(0.2)
A 		103
avr 68
(0.2) 		97.6
(3) 		76.7
(1.1) 		33.2
(-3) 		44.9
(-1.9) 		42.2
(-2.2) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 36.2
(-0.2)
A 		10.6
(-3)
A 		16.8
(-2.3)
A 		65
(3)
P 		54
B 5.6
(-3)
A 		16.2
(-2)
A 		10.6
(-2.5)
A 		68.1
(3)
P 		63
C 21.1
(-1.6)
A 		19.3
(-1.8)
A 		8.5
(-3)
A 		63.2
(3)
P 		55
avr 21
(-2) 		15.4
(-2.6) 		12
(-3) 		65.4
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 8.5
(-2.1)
A 		28
(3)
A 		20.8
(1.1)
P 		10.5
(-1.6)
A 		21
(1.2)
A 		5.2
(-3)
A 		23
B 33.4
(2.8)
M 		34.1
(3)
A 		20.5
(-0.9)
A 		13.2
(-3)
A 		20.4
(-0.9)
A 		15.2
(-2.4)
A 		21
C 23
(0.9)
A 		34.1
(3)
P 		12.7
(-1)
A 		1.8
(-3)
A 		4.9
(-2.4)
A 		21.6
(0.7)
A 		32
avr 21.6
(0.3) 		32.1
(3) 		18
(-0.6) 		8.5
(-3) 		15.4
(-1.2) 		14
(-1.6) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176751_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16170
Sequence Type Exemplar sequence
Representative Public ID C36B7.3 NCBI
Target Description C36B7.3 /REP_DB=WormBase Gene ID /WP=CE04174 /GB=AAK68229.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076796(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076796 NCBI Caenorhabditis elegans C36B7.3 (C36B7.3) mRNA, complete cds. 11/11 None
C36B7.3 ENSEMBL cdna:known chromosome:CEL140:X:7101725:7102064:1 gene:C36B7.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024837 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7101723-7102063(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36B7.3
Entrez Gene 183255 Entrez gene
SwissProt Q966P7 EMBL-EBI
WormBase CE04174 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509197 C36B7.3 [Caenorhabditis elegans] gb|AAK68229.1| Hypothetical protein C36B7.3 [Caenorhabditis elegans] 4.0E-50
blast CAE65841 Hypothetical protein CBG10972 [Caenorhabditis briggsae] 6.0E-19
blast CAE60825 Hypothetical protein CBG04533 [Caenorhabditis briggsae] 4.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509197.1 1 21-43
C36B7.3 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:176751_AT
aatgcatccggattcttcgtataaaatccatcccaaatttttcagctcagctttctttct
ccaacatgctcttgtcgtcattggttcagggagttattttgattttcacaatgtcatcga
tagctgcaatgatacgcaatgaaacatgcgaacactcgtcagaatgcttagagggtctaa
tctgtgagaaacaaatatgcattgagtcaccgattcagaagcggcatccaagatcttttc
atgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCATCCGGATTCTTCGTATAAA 567 165 17 Antisense
TCTTCGTATAAAATCCATCCCAAAT 620 617 30 Antisense
AATCCATCCCAAATTTTTCAGCTCA 654 167 41 Antisense
ATTTTTCAGCTCAGCTTTCTTTCTC 552 15 53 Antisense
TCCAACATGCTCTTGTCGTCATTGG 66 589 76 Antisense
GTCGTCATTGGTTCAGGGAGTTATT 54 473 90 Antisense
TCACAATGTCATCGATAGCTGCAAT 372 625 122 Antisense
GCGAACACTCGTCAGAATGCTTAGA 407 287 164 Antisense
ATATGCATTGAGTCACCGATTCAGA 495 19 211 Antisense
GTCACCGATTCAGAAGCGGCATCCA 36 465 222 Antisense
GCGGCATCCAAGATCTTTTCATGAT 505 293 237 Antisense
Sequence Source Affymetrix Proprietary Database