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[176750_s_at]

Description C55B7.7 /REP_DB=WormBase Gene ID /WP=CE26927 /GB=AAK68278.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 55      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 53.7
(3)
A 		2.7
(-3)
A 		31.6
(0.4)
A 		21.8
(-0.8)
A 		51
B 89.4
(3)
A 		45.8
(-0.1)
A 		7.5
(-2.8)
A 		4.2
(-3)
A 		85
C 51.3
(3)
A 		13.7
(-2.4)
A 		21.3
(-1.3)
A 		9.2
(-3)
A 		42
avr 64.8
(3) 		20.7
(-2) 		20.1
(-2.1) 		11.7
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 14.1
(-2)
A 		70
(3)
P 		38.3
(0.1)
A 		48.6
(1.1)
A 		3.4
(-3)
A 		5.1
(-2.8)
A 		67
B 29.6
(1.5)
A 		5.5
(-3)
A 		30.9
(1.8)
A 		9.4
(-2.3)
A 		10
(-2.2)
A 		37.4
(3)
A 		32
C 71.5
(3)
M 		39.3
(0.2)
A 		38
(0.1)
A 		27
(-0.9)
A 		24.1
(-1.1)
A 		2.2
(-3)
A 		69
avr 38.4
(3) 		38.3
(3) 		35.7
(2.4) 		28.3
(0.7) 		12.5
(-3) 		14.9
(-2.4) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 19.6
(3)
A 		0.6
(-3)
A 		8.3
(-0.6)
A 		3.2
(-2.2)
A 		19
B 28.5
(3)
A 		11.3
(-0.7)
A 		1.7
(-2.8)
A 		0.9
(-3)
A 		28
C 17
(3)
A 		3.9
(-2.1)
A 		7.4
(-0.7)
A 		1.6
(-3)
A 		15
avr 21.7
(3) 		5.3
(-2) 		5.8
(-1.8) 		1.9
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 2.6
(-2.6)
A 		24.9
(3)
P 		8.3
(-1.2)
A 		12.3
(-0.2)
A 		1
(-3)
A 		1.3
(-2.9)
A 		24
B 10.3
(1.2)
A 		1.8
(-3)
A 		7.5
(-0.2)
A 		2.5
(-2.7)
A 		4.1
(-1.9)
A 		13.9
(3)
A 		12
C 26.5
(3)
M 		12
(-0.4)
A 		9.7
(-0.9)
A 		5.4
(-1.9)
A 		7.8
(-1.3)
A 		0.7
(-3)
A 		26
avr 13.1
(3) 		12.9
(2.9) 		8.5
(-0.1) 		6.7
(-1.4) 		4.3
(-3) 		5.3
(-2.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176750_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1504
Sequence Type Exemplar sequence
Representative Public ID C55B7.7 NCBI
Target Description C55B7.7 /REP_DB=WormBase Gene ID /WP=CE26927 /GB=AAK68278.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059466(11), NM_059463(11), NM_059464(11), NM_170882(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059466 NCBI Caenorhabditis elegans K06A5.8d (K06A5.8) mRNA, complete cds. 11/11 A 
NM_059463 NCBI Caenorhabditis elegans K06A5.8b (K06A5.8) mRNA, complete cds. 11/11 A 
NM_059464 NCBI Caenorhabditis elegans K06A5.8a (K06A5.8) mRNA, complete cds. 11/11 A 
NM_170882 NCBI Caenorhabditis elegans K06A5.8c (K06A5.8) mRNA, complete cds. 11/11 A 
SNAP00000038297 ENSEMBL cdna:SNAP chromosome:CEL140:I:6493914:6497053:-1 11/11 None
GENEFINDER00000038315 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6494134:6497053:-1 11/11 None
K06A5.8d ENSEMBL cdna:known chromosome:CEL140:I:6482318:6495782:-1 gene:K06A5.8 11/11 A 
K06A5.8b ENSEMBL cdna:known chromosome:CEL140:I:6484888:6497053:-1 gene:K06A5.8 11/11 A 
K06A5.8a.2 ENSEMBL cdna:known chromosome:CEL140:I:6484936:6497117:-1 gene:K06A5.8 11/11 None
K06A5.8a.1 ENSEMBL cdna:known chromosome:CEL140:I:6484936:6497081:-1 gene:K06A5.8 11/11 None
K06A5.8c ENSEMBL cdna:known chromosome:CEL140:I:6485250:6495220:-1 gene:K06A5.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6494274-6496982(-) 100.0 100.0
Public Domain and Genome References
Ensembl K06A5.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO12408 Hypothetical protein K06A5.8d [Caenorhabditis elegans] ref|NP_491867.2| K06A5.8d [Caenorhabditis elegans] 0.0
blast AAM81097 Hypothetical protein K06A5.8a [Caenorhabditis elegans] ref|NP_491865.2| K06A5.8a [Caenorhabditis elegans] 0.0
blast AAM81098 Hypothetical protein K06A5.8b [Caenorhabditis elegans] ref|NP_491864.2| K06A5.8b [Caenorhabditis elegans] 0.0
blast NP_740871 K06A5.8c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.3E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.3E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.3E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.3E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.9E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.7E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0013
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.9E-5
Sequence
Target Sequence 
>C. ELEGANS:176750_S_AT
ggcaactccaatcaaacctggtggtcaattccctcataatcttgttccatcctccaaatt
aaaattcgcggagaaaatgagccaatcaatgacaatgagcatgcttcccccagccgattt
gaccacttcaatgttcccatcggtgccacgtggccatccaatgtcacagtcaacagctgc
aggattttgtttgggaacggcaataacagaagctgatgcaatggcgcagagtcttctaat
tgatgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCAACTCCAATCAAACCTGGTGGT 127 531 921 Antisense
CAAACCTGGTGGTCAATTCCCTCAT 655 191 933 Antisense
CAATTCCCTCATAATCTTGTTCCAT 574 179 946 Antisense
GTTCCATCCTCCAAATTAAAATTCG 341 439 964 Antisense
AATGACAATGAGCATGCTTCCCCCA 508 165 1008 Antisense
GCCGATTTGACCACTTCAATGTTCC 560 283 1033 Antisense
GTGGCCATCCAATGTCACAGTCAAC 50 493 1070 Antisense
CACAGTCAACAGCTGCAGGATTTTG 238 195 1085 Antisense
GCTGCAGGATTTTGTTTGGGAACGG 484 287 1096 Antisense
GAAGCTGATGCAATGGCGCAGAGTC 352 341 1129 Antisense
GGCGCAGAGTCTTCTAATTGATGAA 693 519 1143 Antisense
Sequence Source Affymetrix Proprietary Database