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[176749_at]

Description C55B7.7 /REP_DB=WormBase Gene ID /WP=CE26927 /GB=AAK68278.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 24.3
(-1.1)
A 		58.6
(3)
A 		16.9
(-2)
A 		8.3
(-3)
A 		50
B 41.3
(3)
A 		8.5
(-2.6)
A 		6.3
(-3)
A 		33.4
(1.6)
A 		35
C 43.8
(3)
A 		12.8
(-2.4)
A 		9.1
(-3)
A 		35.9
(1.6)
A 		35
avr 36.5
(3) 		26.6
(0.7) 		10.8
(-3) 		25.9
(0.5) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 27.7
(-0.5)
A 		62.4
(3)
A 		29.5
(-0.3)
A 		56.4
(2.4)
A 		36.8
(0.4)
A 		2.8
(-3)
A 		60
B 25.5
(3)
A 		6.1
(-2.2)
A 		19.9
(1.5)
A 		21.4
(1.9)
A 		20
(1.5)
A 		2.9
(-3)
A 		23
C 72.3
(3)
A 		19.7
(-1.5)
A 		9.5
(-2.4)
A 		2.9
(-3)
A 		25.6
(-1)
A 		4
(-2.9)
A 		69
avr 41.8
(3) 		29.4
(1.1) 		19.6
(-0.5) 		26.9
(0.7) 		27.5
(0.8) 		3.2
(-3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 8.8
(1)
A 		12.7
(3)
A 		4.4
(-1.3)
A 		1.2
(-3)
A 		12
B 13.2
(3)
A 		2.1
(-2.7)
A 		1.5
(-3)
A 		7.1
(-0.1)
A 		12
C 14.5
(3)
A 		3.7
(-2.7)
A 		3.2
(-3)
A 		6.1
(-1.5)
A 		11
avr 12.2
(3) 		6.2
(-0.9) 		3
(-3) 		4.8
(-1.8) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 5.1
(-1.8)
A 		22.2
(3)
A 		6.4
(-1.4)
A 		14.3
(0.8)
A 		11.1
(-0.1)
A 		0.7
(-3)
A 		22
B 8.9
(3)
A 		2
(-2.3)
A 		4.8
(-0.2)
A 		5.7
(0.5)
A 		8.1
(2.4)
A 		1.1
(-3)
A 		8
C 26.8
(3)
A 		6
(-1.8)
A 		2.4
(-2.6)
A 		0.6
(-3)
A 		8.3
(-1.2)
A 		1.3
(-2.8)
A 		26
avr 13.6
(3) 		10.1
(1.3) 		4.5
(-1.3) 		6.9
(-0.2) 		9.2
(0.9) 		1
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176749_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1504
Sequence Type Exemplar sequence
Representative Public ID C55B7.7 NCBI
Target Description C55B7.7 /REP_DB=WormBase Gene ID /WP=CE26927 /GB=AAK68278.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059466(11), NM_059463(11), NM_059464(11), NM_170882(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059466 NCBI Caenorhabditis elegans K06A5.8d (K06A5.8) mRNA, complete cds. 11/11 A 
NM_059463 NCBI Caenorhabditis elegans K06A5.8b (K06A5.8) mRNA, complete cds. 11/11 A 
NM_059464 NCBI Caenorhabditis elegans K06A5.8a (K06A5.8) mRNA, complete cds. 11/11 A 
NM_170882 NCBI Caenorhabditis elegans K06A5.8c (K06A5.8) mRNA, complete cds. 11/11 A 
SNAP00000038297 ENSEMBL cdna:SNAP chromosome:CEL140:I:6493914:6497053:-1 11/11 None
GENEFINDER00000038315 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6494134:6497053:-1 11/11 None
K06A5.8d ENSEMBL cdna:known chromosome:CEL140:I:6482318:6495782:-1 gene:K06A5.8 11/11 A 
K06A5.8b ENSEMBL cdna:known chromosome:CEL140:I:6484888:6497053:-1 gene:K06A5.8 11/11 A 
K06A5.8a.2 ENSEMBL cdna:known chromosome:CEL140:I:6484936:6497117:-1 gene:K06A5.8 11/11 None
K06A5.8a.1 ENSEMBL cdna:known chromosome:CEL140:I:6484936:6497081:-1 gene:K06A5.8 11/11 None
K06A5.8c ENSEMBL cdna:known chromosome:CEL140:I:6485250:6495220:-1 gene:K06A5.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6494274-6496982(-) 100.0 100.0
Public Domain and Genome References
Ensembl K06A5.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO12408 Hypothetical protein K06A5.8d [Caenorhabditis elegans] ref|NP_491867.2| K06A5.8d [Caenorhabditis elegans] 0.0
blast AAM81097 Hypothetical protein K06A5.8a [Caenorhabditis elegans] ref|NP_491865.2| K06A5.8a [Caenorhabditis elegans] 0.0
blast AAM81098 Hypothetical protein K06A5.8b [Caenorhabditis elegans] ref|NP_491864.2| K06A5.8b [Caenorhabditis elegans] 0.0
blast NP_740871 K06A5.8c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.3E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.3E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.3E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.3E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.9E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.7E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0013
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.9E-5
Sequence
Target Sequence 
>C. ELEGANS:176749_AT
gaacaattttcaatgcctttcaagcagaaacaattggagttgaaagtcgatcatataagg
aaaccgaaactggaagctccttggacagaaacaattatggcaactccaatcaaacctggt
ggtcaattccctcataatcttgttccatcctccaaattaaaattcgcggagaaaatgagc
caatcaatgacaatgagcatgcttcccccagccgatttgaccacttcaatgttcccatcg
gtgccacgtggccatccaatgtcacagtcaacagctgcaggattttgtttgggaacggca
ataacagaagctgatgcaatggcgcagagtcttctaattgatgaaatgatggaatcaagt
caattggcaagaacatcaagacctgatacattgagaggagttggaatgatgatgactgga
gatacaattgttcctgtacaacctgcacaagtaatgatcaatgccccatctcaactctca
agtcaaatgatgagcatgtcaatggctccccaagtgatggcgccgatcgctccaatggct
caaaatatgattaattacgattttgctccagttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAATTTTCAATGCCTTTCAAGC 509 353 823 Antisense
GAAACCGAAACTGGAAGCTCCTTGG 644 357 882 Antisense
GGAAGCTCCTTGGACAGAAACAATT 417 531 894 Antisense
GAAACAATTATGGCAACTCCAATCA 210 355 910 Antisense
GACTGGAGATACAATTGTTCCTGTA 93 377 1236 Antisense
TGTTCCTGTACAACCTGCACAAGTA 223 563 1251 Antisense
AGTAATGATCAATGCCCCATCTCAA 463 61 1272 Antisense
CCATCTCAACTCTCAAGTCAAATGA 508 271 1288 Antisense
GATGAGCATGTCAATGGCTCCCCAA 680 411 1311 Antisense
TGTCAATGGCTCCCCAAGTGATGGC 569 557 1319 Antisense
TAATTACGATTTTGCTCCAGTTCGA 44 633 1374 Antisense
Sequence Source Affymetrix Proprietary Database