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[176748_s_at]

Description C18C4.5 /REP_DB=WormBase Gene ID /WP=CE06850 /GB=AAK52177.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_highest_8_8 > 42      4grp_high_8_8 > 49      6grp_highest_nonorm > 61      6grp_total > 71      4grp_total > 54      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 260
1 2 3 4 range
A 252.8
(3)
P 		189.4
(-3)
P 		193.6
(-2.6)
P 		191.6
(-2.8)
P 		63
B 337.7
(3)
P 		205.5
(-0.1)
P 		185.9
(-0.5)
P 		77.9
(-3)
P 		260
C 294.6
(3)
P 		189
(-1.6)
P 		252.3
(1.2)
P 		155.7
(-3)
P 		139
avr 295
(3) 		194.6
(-0.9) 		210.6
(-0.3) 		141.7
(-3) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 430
1 2 3 4 5 6 range
A 400.9
(1.2)
P 		427.1
(1.8)
P 		430.9
(1.9)
P 		483.3
(3)
P 		469.6
(2.7)
P 		206.7
(-3)
P 		277
B 440.2
(1.2)
P 		473.9
(2)
P 		432.8
(1)
P 		516.5
(3)
P 		466.1
(1.8)
P 		261.4
(-3)
P 		255
C 398.9
(-0.7)
P 		518.2
(1.2)
P 		383.7
(-0.9)
P 		636.3
(3)
P 		339.3
(-1.6)
P 		248.8
(-3)
P 		388
avr 413.3
(0.4) 		473.1
(1.6) 		415.8
(0.5) 		545.4
(3) 		425
(0.6) 		239
(-3) 		306
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 92
(3)
P 		41.1
(-1.8)
P 		50.6
(-0.9)
P 		28
(-3)
P 		64
B 107.7
(3)
P 		50.8
(-0.7)
P 		43.1
(-1.3)
P 		16.6
(-3)
P 		91
C 97.5
(3)
P 		54.3
(-0.6)
P 		87.9
(2.2)
P 		26.3
(-3)
P 		71
avr 99.1
(3) 		48.7
(-1) 		60.5
(-0.1) 		23.6
(-3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 73.9
(-1.6)
P 		151.9
(3)
P 		93.8
(-0.4)
P 		122.6
(1.3)
P 		141.7
(2.4)
P 		50.3
(-3)
P 		102
B 153.2
(0.6)
P 		157.7
(0.9)
P 		105.1
(-2.5)
P 		136.8
(-0.4)
P 		189.4
(3)
P 		97.5
(-3)
P 		92
C 147.8
(2.2)
P 		158.1
(3)
P 		97.7
(-1.8)
P 		128
(0.6)
P 		109.8
(-0.9)
P 		83.3
(-3)
P 		75
avr 125
(0.7) 		155.9
(3) 		98.9
(-1.3) 		129.1
(1) 		147
(2.3) 		77
(-3) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176748_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12171
Sequence Type Exemplar sequence
Representative Public ID C18C4.5 NCBI
Target Description C18C4.5 /REP_DB=WormBase Gene ID /WP=CE06850 /GB=AAK52177.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171457(10), NM_171458(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171457 NCBI Caenorhabditis elegans C18C4.5a (C18C4.5) mRNA, complete cds. 10/11 None
NM_171458 NCBI Caenorhabditis elegans C18C4.5b (C18C4.5) mRNA, complete cds. 11/11 None
SNAP00000035602 ENSEMBL cdna:SNAP chromosome:CEL140:V:5553334:5558614:-1 11/11 None
GENEFINDER00000035611 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5553236:5558614:-1 11/11 None
C18C4.5a ENSEMBL cdna:known chromosome:CEL140:V:5552920:5559876:-1 gene:C18C4.5 10/11 A 
C18C4.5b ENSEMBL cdna:known chromosome:CEL140:V:5553041:5558614:-1 gene:C18C4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5553014-5558614(-) 100.0 100.0
Public Domain and Genome References
Ensembl C18C4.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM29662 Hypothetical protein C18C4.5a [Caenorhabditis elegans] ref|NP_741538.1| C18C4.5a [Caenorhabditis elegans] 0.0
blast AAM29663 Hypothetical protein C18C4.5b [Caenorhabditis elegans] ref|NP_741539.2| C18C4.5b [Caenorhabditis elegans] 0.0
blast T34107 hypothetical protein C18C4.5 - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:176748_S_AT
tcttgccggcgagcttctgaaatcgcacagtgcagctgaaagatcattgcaaatggagaa
agaaaagatttctaagcaattcgaggaaaggcttaaaacagcaaatcttgaaaagacacg
ccttgcttcagaattgcaaatggccgattccagaaagaataccctagagaagcaagtgga
tgaacttcaatctcaagtagaaaccgctgagagaaaccgtcgtcgtgatcttcatcaatt
ggatatggtacgagaagaattgcatcaagtgaagaacgacaatgaaaaactaaaatcgtc
tacaccaattgctccacctagatccaatacaagaacaatttccaatatgtcagctatgac
caactggacacaagctgatttcagcgaatgtgaagatttgacaaggctacggacggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTGCCGGCGAGCTTCTGAAATCG 513 617 2673 Antisense
GCTTCTGAAATCGCACAGTGCAGCT 13 307 2685 Antisense
GAAAAGACACGCCTTGCTTCAGAAT 597 353 2782 Antisense
GCTTCAGAATTGCAAATGGCCGATT 47 305 2797 Antisense
GGCCGATTCCAGAAAGAATACCCTA 504 541 2814 Antisense
CCGTCGTCGTGATCTTCATCAATTG 471 263 2889 Antisense
TAAAATCGTCTACACCAATTGCTCC 669 637 2963 Antisense
TGCTCCACCTAGATCCAATACAAGA 4 583 2982 Antisense
CAATTTCCAATATGTCAGCTATGAC 251 181 3008 Antisense
GACCAACTGGACACAAGCTGATTTC 88 385 3030 Antisense
AGATTTGACAAGGCTACGGACGGAA 635 63 3066 Antisense
Sequence Source Affymetrix Proprietary Database